Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GQF93_RS22970 Genome accession   NZ_CP059835
Coordinates   4754905..4756332 (-) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli strain tcmA_3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4749905..4761332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQF93_RS22940 (GQF93_22935) yeeZ 4749960..4750784 (+) 825 WP_000754735.1 SDR family oxidoreductase -
  GQF93_RS22945 (GQF93_22940) yeeY 4750830..4751759 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  GQF93_RS22950 (GQF93_22945) yoeI 4751974..4752036 (+) 63 WP_010723108.1 membrane protein YoeI -
  GQF93_RS22955 (GQF93_22950) plaP 4752026..4753384 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GQF93_RS22960 (GQF93_22955) tsuA 4753563..4754621 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  GQF93_RS22965 (GQF93_22960) tsuB 4754635..4754862 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GQF93_RS22970 (GQF93_22965) sbcB 4754905..4756332 (-) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  GQF93_RS22975 (GQF93_22970) dacD 4756541..4757707 (+) 1167 WP_001379902.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GQF93_RS22980 (GQF93_22975) sbmC 4757826..4758299 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  GQF93_RS22985 (GQF93_22980) yeeA 4758497..4759555 (+) 1059 WP_001200891.1 FUSC family protein -
  GQF93_RS22990 (GQF93_22985) tmaR 4759727..4760056 (+) 330 WP_000450409.1 DUF496 family protein -
  GQF93_RS22995 (GQF93_22990) - 4760157..4760600 (-) 444 WP_001369832.1 EutP/PduV family microcompartment system protein -
  GQF93_RS23000 (GQF93_22995) pduU 4760605..4760955 (-) 351 WP_000211394.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=411260 GQF93_RS22970 WP_000980607.1 4754905..4756332(-) (sbcB) [Escherichia coli strain tcmA_3]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=411260 GQF93_RS22970 WP_000980607.1 4754905..4756332(-) (sbcB) [Escherichia coli strain tcmA_3]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment