Detailed information NTG0411247

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GQF93_RS18810
• Genome accession: NZ_CP059835
• Coordinates: 3891894..3892886 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain tcmA_3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3886894..3897886

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQF93_RS18780 (GQF93_18775)	ispD	3886955..3887665 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GQF93_RS18785 (GQF93_18780)	ispF	3887665..3888144 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GQF93_RS18790 (GQF93_18785)	truD	3888141..3889190 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GQF93_RS18795 (GQF93_18790)	surE	3889171..3889932 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GQF93_RS18800 (GQF93_18795)	pcm	3889926..3890552 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GQF93_RS18805 (GQF93_18800)	nlpD	3890737..3891831 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
GQF93_RS18810 (GQF93_18805)	rpoS	3891894..3892886 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GQF93_RS18815 (GQF93_18810)	-	3893007..3893414 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
GQF93_RS18820 (GQF93_18815)	-	3893561..3894154 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
GQF93_RS18825 (GQF93_18820)	-	3894154..3895580 (+)	1427	Protein_3729	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
GQF93_RS18830 (GQF93_18825)	-	3895591..3895827 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
GQF93_RS18835 (GQF93_18830)	ygbN	3895866..3897230 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=411247 GQF93_RS18810 WP_000081550.1 3891894..3892886(+) (rpoS) [Escherichia coli strain tcmA_3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=411247 GQF93_RS18810 WP_000081550.1 3891894..3892886(+) (rpoS) [Escherichia coli strain tcmA_3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715