Detailed information NTG0411234

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: GRF55_RS07355
• Genome accession: NZ_CP047159
• Coordinates: 1717908..1719281 (+)
• Length: 457 a.a.
• NCBI ID: WP_220367803.1
• Uniprot ID: -
• Organism: Prevotella sp. Rep29
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1712908..1724281

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRF55_RS07345 (GRF55_07350)	-	1714731..1716857 (-)	2127	WP_220367802.1	M48 family metallopeptidase	-
GRF55_RS07350 (GRF55_07355)	-	1716873..1717790 (-)	918	WP_255563748.1	ABC transporter substrate-binding protein	-
GRF55_RS07355 (GRF55_07360)	radA	1717908..1719281 (+)	1374	WP_220367803.1	DNA repair protein RadA	Machinery gene
GRF55_RS07360 (GRF55_07365)	-	1719357..1722599 (+)	3243	WP_220367804.1	exodeoxyribonuclease V subunit beta	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49692.15 Da
• Isoelectric Point: 6.4157

>NTDB_id=411234 GRF55_RS07355 WP_220367803.1 1717908..1719281(+) (radA) [Prevotella sp. Rep29]
MAKDRVVYVCEQCGQESPKWVGKCPSCGEWNSFKELRVAPSSPTPRPAHGEADAAKVFKLSDVSSVQDEVRIDMKDSELN
RVLGGGMVVGSLVLLGGEPGIGKSTLLLQSVLRLSGVGVLYVSGEESASQLRMRAERVGWHQLSDEVSFVCETCLERVFE
HIDRLHPDIVVIDSIQTIYSERVESSAGSVSQVRECAASLLRFCKSAGVGVFMIGHINKDGVLAGPKVLEHIVDAVIQFE
GDGRYLYRVLRCIKNRFGSTSELGIYEMAQDGLRGVSNPSELLLNGVQGGLSGIAISCAVEGIRPFLLETQALVSSAAYG
TPQRSATGFDSRRLNMLLAVLEKRVGFRLIQRDVFLNIAGGLRITDLAMDLGVIAAVHSSNTDLPIEEGWCMAGEVGLSG
EVRSVSRIEQRISEAARLGFKHMIVPRYNLKGLKTAKYDIELHGVDKVEEALRILFG

Nucleotide

• Length: 1374 bp

>NTDB_id=411234 GRF55_RS07355 WP_220367803.1 1717908..1719281(+) (radA) [Prevotella sp. Rep29]
ATGGCTAAGGATAGAGTTGTTTATGTGTGTGAGCAATGTGGTCAGGAGTCACCCAAATGGGTTGGCAAGTGCCCTTCGTG
TGGTGAGTGGAACAGTTTCAAGGAACTGCGAGTTGCGCCGAGTTCTCCTACCCCACGTCCAGCACATGGAGAGGCAGATG
CTGCCAAGGTTTTCAAACTGAGCGATGTGTCGTCTGTTCAAGACGAAGTGCGTATCGACATGAAGGACAGCGAACTGAAC
CGCGTGCTGGGAGGCGGTATGGTTGTAGGGTCGCTTGTGTTGCTGGGTGGCGAACCGGGCATCGGTAAGAGTACGTTGCT
CCTGCAATCAGTATTAAGACTATCGGGTGTAGGCGTGCTGTATGTGAGTGGCGAAGAGAGTGCTTCGCAGTTGCGCATGC
GTGCCGAACGTGTCGGGTGGCATCAACTATCCGACGAGGTTTCTTTTGTTTGCGAAACCTGCCTTGAACGCGTATTTGAA
CATATTGACCGTTTGCATCCCGACATCGTGGTGATTGACTCTATCCAAACTATTTACAGCGAGCGTGTTGAGAGCTCTGC
GGGCAGTGTCTCTCAGGTGCGTGAGTGTGCTGCCAGCCTTCTACGTTTCTGCAAGTCCGCTGGTGTCGGTGTGTTCATGA
TTGGTCACATCAACAAGGACGGAGTACTGGCAGGTCCGAAAGTTTTGGAACATATTGTTGATGCGGTGATTCAGTTTGAA
GGTGACGGCCGATATTTGTATCGCGTTTTGCGTTGTATTAAGAATCGTTTTGGCAGCACTTCGGAGTTAGGCATTTACGA
GATGGCGCAGGATGGCTTGCGCGGAGTTTCCAATCCTTCGGAACTTCTCTTGAACGGTGTTCAGGGAGGCTTGTCAGGCA
TCGCCATCAGCTGTGCCGTTGAGGGCATACGACCATTCCTTCTTGAGACTCAGGCATTGGTTTCGAGTGCGGCATACGGC
ACTCCCCAACGCTCGGCAACGGGCTTTGACAGCCGTCGATTGAACATGCTACTCGCTGTTCTTGAGAAGCGTGTCGGTTT
CCGTTTGATTCAGCGAGATGTGTTTTTGAACATTGCCGGTGGATTGCGCATCACCGATTTGGCAATGGACTTGGGCGTGA
TTGCCGCCGTTCATTCGAGCAACACCGACTTGCCCATTGAGGAAGGTTGGTGCATGGCTGGCGAAGTAGGTTTGAGTGGT
GAAGTGCGTTCAGTGAGTCGCATTGAGCAGCGCATCTCCGAAGCCGCACGGCTGGGATTCAAGCACATGATTGTTCCCCG
CTACAATCTAAAAGGGCTGAAGACTGCTAAATACGACATTGAACTGCATGGTGTGGACAAAGTAGAAGAAGCATTGCGGA
TTCTGTTTGGATAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (71-221)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (345-429)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.807	100	0.492
radA	Streptococcus mitis NCTC 12261	46.187	100	0.464
radA	Streptococcus mitis SK321	46.187	100	0.464
radA	Streptococcus pneumoniae Rx1	46.187	100	0.464
radA	Streptococcus pneumoniae D39	46.187	100	0.464
radA	Streptococcus pneumoniae R6	46.187	100	0.464
radA	Streptococcus pneumoniae TIGR4	46.187	100	0.464