Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   GRQ40_RS12920 Genome accession   NZ_CP047158
Coordinates   2683261..2683557 (-) Length   98 a.a.
NCBI ID   WP_080862312.1    Uniprot ID   -
Organism   Anoxybacillus sp. PDR2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2678261..2688557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRQ40_RS12885 (GRQ40_12885) - 2679434..2680228 (+) 795 WP_044744502.1 YqhG family protein -
  GRQ40_RS12890 (GRQ40_12890) - 2680521..2680700 (-) 180 WP_044744503.1 YqzE family protein -
  GRQ40_RS12895 (GRQ40_12895) - 2680725..2681240 (-) 516 WP_044744504.1 shikimate kinase -
  GRQ40_RS12900 (GRQ40_12900) comGG 2681702..2682088 (-) 387 WP_066145817.1 competence type IV pilus minor pilin ComGG -
  GRQ40_RS12905 (GRQ40_12905) comGF 2682085..2682543 (-) 459 WP_231734572.1 competence type IV pilus minor pilin ComGF -
  GRQ40_RS12910 (GRQ40_12910) comGE 2682494..2682847 (-) 354 WP_159720136.1 competence type IV pilus minor pilin ComGE -
  GRQ40_RS12915 (GRQ40_12915) comGD 2682831..2683277 (-) 447 WP_066145823.1 competence type IV pilus minor pilin ComGD -
  GRQ40_RS12920 (GRQ40_12920) comGC 2683261..2683557 (-) 297 WP_080862312.1 competence type IV pilus major pilin ComGC Machinery gene
  GRQ40_RS12925 (GRQ40_12925) comGB 2683575..2684603 (-) 1029 WP_066145828.1 competence type IV pilus assembly protein ComGB -
  GRQ40_RS12930 (GRQ40_12930) comGA 2684596..2685660 (-) 1065 WP_044744511.1 competence type IV pilus ATPase ComGA Machinery gene
  GRQ40_RS12935 (GRQ40_12935) - 2685902..2686609 (+) 708 WP_066145834.1 metalloregulator ArsR/SmtB family transcription factor -
  GRQ40_RS12940 (GRQ40_12940) - 2686748..2686990 (+) 243 WP_044744513.1 DUF2626 domain-containing protein -
  GRQ40_RS12945 (GRQ40_12945) - 2687224..2688351 (-) 1128 WP_159720137.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11044.94 Da        Isoelectric Point: 6.7075

>NTDB_id=411208 GRQ40_RS12920 WP_080862312.1 2683261..2683557(-) (comGC) [Anoxybacillus sp. PDR2]
MQEKGFTLIEMLIVLMVISVLLLIAIPNIVKHNQMINDKGCEAFVKTVQAQVKAYQMEHDTLPTIRQLVDGNYIKSNKCP
NGRTIYIDSSGEVHEGEK

Nucleotide


Download         Length: 297 bp        

>NTDB_id=411208 GRQ40_RS12920 WP_080862312.1 2683261..2683557(-) (comGC) [Anoxybacillus sp. PDR2]
ATGCAAGAAAAAGGATTCACATTGATCGAGATGCTTATCGTTTTGATGGTGATTTCAGTTTTATTGCTTATTGCCATTCC
CAATATCGTCAAGCATAACCAAATGATTAACGATAAAGGATGCGAAGCATTTGTTAAAACCGTGCAAGCACAGGTTAAGG
CCTATCAGATGGAGCATGATACACTTCCAACTATCCGACAGCTTGTTGATGGAAATTATATTAAATCGAATAAATGCCCT
AACGGCCGCACCATTTATATCGATAGCAGCGGGGAAGTGCATGAGGGTGAGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

51.579

96.939

0.5
  comGC Staphylococcus aureus MW2

45.161

94.898

0.429
  comGC Staphylococcus aureus N315

45.161

94.898

0.429

Multiple sequence alignment