Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GRQ40_RS12675 Genome accession   NZ_CP047158
Coordinates   2638315..2640036 (-) Length   573 a.a.
NCBI ID   WP_044744468.1    Uniprot ID   A0A160FCP9
Organism   Anoxybacillus sp. PDR2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2633315..2645036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRQ40_RS12660 (GRQ40_12660) - 2634715..2635695 (-) 981 WP_159720128.1 tyrosine-type recombinase/integrase -
  GRQ40_RS12665 (GRQ40_12665) spo0A 2635856..2636635 (-) 780 WP_044744466.1 sporulation transcription factor Spo0A -
  GRQ40_RS12670 (GRQ40_12670) spoIVB 2636903..2638189 (-) 1287 WP_044744467.1 SpoIVB peptidase -
  GRQ40_RS12675 (GRQ40_12675) recN 2638315..2640036 (-) 1722 WP_044744468.1 DNA repair protein RecN Machinery gene
  GRQ40_RS12680 (GRQ40_12680) ahrC 2640054..2640503 (-) 450 WP_044744684.1 transcriptional regulator AhrC/ArgR -
  GRQ40_RS12685 (GRQ40_12685) - 2640559..2641401 (-) 843 WP_044744469.1 TlyA family RNA methyltransferase -
  GRQ40_RS12690 (GRQ40_12690) dxs 2641405..2643297 (-) 1893 WP_066145743.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GRQ40_RS12695 (GRQ40_12695) - 2643522..2644397 (-) 876 WP_066146533.1 polyprenyl synthetase family protein -
  GRQ40_RS12700 (GRQ40_12700) - 2644404..2644634 (-) 231 WP_044744471.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64529.76 Da        Isoelectric Point: 4.9025

>NTDB_id=411207 GRQ40_RS12675 WP_044744468.1 2638315..2640036(-) (recN) [Anoxybacillus sp. PDR2]
MLAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRYGEEKAEIEGLFLLEEETHPCYQK
CAEVGIDISEGMVILRREISVSGKSVCRVNGKLVTMGILREIGSTLVDIHGQHEHQELMDSSRHLPLLDEYGGAEIASAL
EEYQAVYRKYEQLKKQLQKLNENEQQMAHRLDLLTFQLDEIQKAGLQPNEDEQLMEEKVKIVNFQKIYEALKNSYEALYG
EQRGLDWIGLTMSHLDDVAHIDAGLREMHETIANSYYLLEEMAYKLRDQLEQLEYDPNRLDFIEGRLNEINHLKRKYGQT
VADILQYAEKIAQELDTIQNRDTHIHQLQKELQSVTEDLLIEAKNVTAVRMKHAQTLVQHIYQELKDLYMEKTQFDIVFS
KREGLLDAPLIDGVPVKFQEDGVDVAEFYISTNVGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRVSVGSQVLCISHLPQVAAMADTHLLISKETDGNRTKTSVKALTEDEKIKEIGRMISGVEITELTKEH
AKELLELAAKIKG

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=411207 GRQ40_RS12675 WP_044744468.1 2638315..2640036(-) (recN) [Anoxybacillus sp. PDR2]
GTGCTTGCGGAATTATCAATTAAAAATTTTGCCATTATTGAGTCTCTGTCGATCTCCTTTGAGAAAGGCTTGACAGTGCT
GACAGGGGAGACAGGAGCCGGAAAGTCCATTATTATTGATGCCATCCATTTGTTGATTGGTGGGCGTGGTTCCGCTGAAT
TTGTTCGCTACGGCGAAGAGAAAGCGGAAATTGAAGGACTGTTTTTATTAGAAGAAGAAACGCATCCCTGCTATCAAAAA
TGTGCAGAAGTGGGCATTGATATTAGCGAAGGGATGGTCATTCTGCGCCGAGAGATTTCGGTAAGCGGAAAAAGCGTTTG
CCGCGTGAATGGCAAATTGGTGACGATGGGAATTTTGCGCGAAATTGGCTCTACTCTTGTCGATATCCATGGGCAGCATG
AACATCAGGAATTAATGGATTCCAGCCGGCATTTGCCGTTGCTTGATGAATATGGAGGCGCAGAAATTGCTTCGGCCCTC
GAAGAGTATCAAGCGGTGTATCGAAAATATGAACAGTTAAAAAAACAGCTGCAAAAATTGAATGAAAATGAACAGCAAAT
GGCGCACCGCCTTGATTTGCTCACATTTCAGCTTGATGAGATTCAAAAAGCCGGCTTGCAGCCAAATGAAGATGAACAAT
TAATGGAAGAAAAAGTAAAGATTGTGAACTTCCAAAAAATATATGAAGCGTTAAAGAATAGTTACGAAGCGCTATATGGA
GAACAGCGCGGGCTTGATTGGATCGGGCTTACGATGAGCCATTTAGATGACGTTGCTCACATTGATGCCGGCTTGAGAGA
AATGCATGAAACGATCGCCAACAGCTATTATTTACTCGAAGAAATGGCTTATAAATTGCGCGATCAATTAGAGCAGTTGG
AATATGATCCGAACCGCCTTGATTTTATTGAAGGACGCCTGAATGAAATTAATCATTTAAAACGAAAATATGGACAGACA
GTCGCCGATATTTTGCAATATGCAGAAAAAATTGCCCAAGAGCTTGATACGATCCAAAATCGCGATACGCATATTCATCA
GCTTCAAAAAGAACTGCAATCTGTAACAGAAGATTTACTGATTGAGGCGAAAAATGTTACCGCTGTGCGAATGAAGCATG
CCCAAACGCTGGTTCAGCACATTTATCAAGAACTCAAAGATTTGTATATGGAAAAGACGCAGTTCGATATTGTTTTTAGC
AAACGGGAGGGCTTGCTTGATGCTCCGTTAATTGATGGCGTGCCTGTCAAATTTCAAGAGGACGGTGTTGATGTCGCCGA
ATTTTATATTTCAACAAACGTTGGCGAGCCGTTAAAACCTCTCGCCAAAGTCGCTTCAGGAGGCGAACTGTCTCGCATCA
TGCTGGCCTTAAAGAGTATTTTTTCTAAGCATCAAGGCGTTACATCGATCATTTTTGATGAAGTGGATACGGGAGTGAGC
GGACGCGTGGCGCAGGCGATTGCTGAAAAAATTTATCGTGTGTCTGTCGGCTCACAGGTGCTTTGCATCTCCCACTTGCC
GCAAGTCGCAGCGATGGCGGATACGCATTTGCTCATTTCTAAGGAAACAGACGGAAATCGAACCAAAACATCGGTCAAAG
CGCTTACAGAAGATGAAAAAATTAAGGAAATTGGCCGAATGATTTCTGGGGTGGAAATTACAGAGCTGACAAAGGAACAC
GCGAAAGAGCTGCTTGAATTAGCAGCAAAAATCAAAGGATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160FCP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.24

100

0.634

Multiple sequence alignment