Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GRQ40_RS00570 Genome accession   NZ_CP047158
Coordinates   110204..111589 (+) Length   461 a.a.
NCBI ID   WP_066150187.1    Uniprot ID   -
Organism   Anoxybacillus sp. PDR2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 105204..116589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRQ40_RS00550 (GRQ40_00550) - 105577..106038 (+) 462 WP_044744090.1 CtsR family transcriptional regulator -
  GRQ40_RS00555 (GRQ40_00555) - 106054..106599 (+) 546 WP_044744089.1 UvrB/UvrC motif-containing protein -
  GRQ40_RS00560 (GRQ40_00560) - 106602..107702 (+) 1101 WP_066150182.1 protein arginine kinase -
  GRQ40_RS00565 (GRQ40_00565) clpC 107689..110121 (+) 2433 WP_066150184.1 ATP-dependent protease ATP-binding subunit ClpC -
  GRQ40_RS00570 (GRQ40_00570) radA 110204..111589 (+) 1386 WP_066150187.1 DNA repair protein RadA Machinery gene
  GRQ40_RS00575 (GRQ40_00575) - 111700..112794 (+) 1095 WP_044744093.1 PIN/TRAM domain-containing protein -
  GRQ40_RS00580 (GRQ40_00580) ispD 112819..113505 (+) 687 WP_066150190.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GRQ40_RS00585 (GRQ40_00585) ispF 113510..113986 (+) 477 WP_044744084.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GRQ40_RS00590 (GRQ40_00590) gltX 114056..115516 (+) 1461 WP_080862214.1 glutamate--tRNA ligase -
  GRQ40_RS00595 (GRQ40_00595) cysE 115852..116517 (+) 666 WP_066150196.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50246.97 Da        Isoelectric Point: 6.9620

>NTDB_id=411187 GRQ40_RS00570 WP_066150187.1 110204..111589(+) (radA) [Anoxybacillus sp. PDR2]
MKKKTKFVCQECGYESAKWMGKCPGCQTWNSMIEEIEKGKPAARGVFVHTAPSSISKPVSITTVATAQEPRMVTDLAEFN
RVLGGGIVKGSLVLIGGDPGIGKSTILLQVSAQLALNQYKVLYISGEESVKQTKLRADRLGISANELYVLSETDLEYIHQ
AIEEIQPDFVVIDSIQTIYRAEITSAPGSVSQVRECTGELMRIAKTKGIAIFIVGHVTKEGSIAGPRILEHMVDTVLYFE
GERHHTYRILRAVKNRFGSTNEIGIFEMRETGLLEVENPSEVFLEERSSGVAGSTVVASMEGTRPVLVEIQALISPTSFG
NPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDLPTNPSDVIIGEVGLTG
EVRRVSRIEQRVQEAVKLGFHRIIIPKNNLGGWLAPKGVEIIGVSHVAEALEYTLGDRKSV

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=411187 GRQ40_RS00570 WP_066150187.1 110204..111589(+) (radA) [Anoxybacillus sp. PDR2]
ATGAAAAAGAAAACGAAATTTGTATGTCAAGAATGCGGATATGAATCAGCCAAATGGATGGGAAAGTGTCCAGGTTGTCA
GACGTGGAACTCTATGATTGAGGAAATTGAGAAAGGAAAACCAGCAGCAAGGGGAGTATTTGTTCATACTGCTCCTTCTT
CTATATCCAAGCCAGTGTCGATTACAACCGTAGCAACAGCACAGGAGCCAAGAATGGTAACGGATCTTGCGGAGTTTAAT
CGCGTGTTAGGTGGCGGAATCGTTAAAGGTTCTCTCGTTCTTATCGGCGGTGATCCTGGTATCGGAAAATCAACCATTCT
TTTGCAGGTGTCTGCACAATTGGCGTTGAATCAATATAAGGTGCTATATATTTCCGGGGAAGAATCAGTCAAGCAAACGA
AGCTGCGTGCTGACCGTTTGGGCATTTCCGCTAATGAGCTGTATGTATTATCAGAAACAGACTTGGAATATATTCATCAA
GCGATTGAAGAAATTCAACCTGACTTTGTAGTAATTGATTCCATTCAAACGATCTATCGAGCCGAGATTACATCAGCTCC
CGGCAGCGTTTCTCAAGTCAGGGAGTGTACAGGGGAATTGATGCGAATCGCTAAAACAAAAGGAATTGCGATTTTTATTG
TCGGCCATGTAACAAAGGAAGGCTCCATTGCTGGACCGAGAATTTTAGAGCATATGGTAGATACAGTTTTGTATTTTGAA
GGTGAGCGCCATCATACGTACCGAATTTTACGAGCAGTGAAGAATCGATTTGGATCGACTAATGAGATTGGTATTTTTGA
AATGAGAGAAACGGGGCTGCTAGAGGTTGAAAACCCTTCAGAGGTATTCTTGGAAGAACGATCAAGCGGAGTGGCAGGAT
CAACGGTAGTAGCGTCAATGGAGGGCACAAGACCCGTGCTCGTGGAAATTCAAGCGTTAATTTCCCCAACAAGCTTTGGC
AATCCAAGAAGAATGGCGACGGGAATTGACCATAACCGCGTATCATTGCTGATGGCTGTACTAGAAAAAAGAGTTGGGTT
GCTTCTGCAAAACCAAGACGCTTATTTAAAAGTAGCCGGGGGAGTCAAATTAGATGAACCAGCTATTGATTTAGCCATCG
CTGTAAGCATTGCTTCCAGCTTTCGCGATCTGCCGACGAATCCATCAGATGTCATCATCGGAGAGGTGGGGCTGACAGGA
GAAGTACGTCGAGTCTCTCGTATCGAGCAGCGAGTTCAAGAAGCAGTAAAGCTTGGATTTCATCGTATTATTATTCCAAA
AAATAATTTGGGAGGATGGCTGGCGCCAAAAGGAGTGGAAATTATCGGGGTGTCTCATGTCGCTGAAGCGTTGGAATACA
CGTTAGGAGACAGAAAATCTGTATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

Subunit ChlI of Mg-chelatase (ChlI)

(364-429)

AAA domain (AAA_25)

(79-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

78.07

98.915

0.772
  radA Streptococcus mitis NCTC 12261

63.193

97.831

0.618
  radA Streptococcus pneumoniae Rx1

63.193

97.831

0.618
  radA Streptococcus pneumoniae D39

63.193

97.831

0.618
  radA Streptococcus pneumoniae R6

63.193

97.831

0.618
  radA Streptococcus pneumoniae TIGR4

63.193

97.831

0.618
  radA Streptococcus mitis SK321

62.971

97.831

0.616

Multiple sequence alignment