Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GST84_RS24635 Genome accession   NZ_CP047152
Coordinates   5330273..5330674 (-) Length   133 a.a.
NCBI ID   WP_021783754.1    Uniprot ID   -
Organism   Pseudomonas putida strain PP27     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5325273..5335674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GST84_RS24620 (GST84_24280) - 5327237..5329261 (-) 2025 WP_223271165.1 methyl-accepting chemotaxis protein -
  GST84_RS24625 (GST84_24285) - 5329309..5329863 (-) 555 WP_021783755.1 chemotaxis protein CheW -
  GST84_RS24630 (GST84_24290) pilH 5329860..5330225 (-) 366 WP_014592657.1 twitching motility response regulator PilH -
  GST84_RS24635 (GST84_24295) pilG 5330273..5330674 (-) 402 WP_021783754.1 PleD family two-component system response regulator Regulator
  GST84_RS24640 (GST84_24300) gshB 5330913..5331866 (+) 954 WP_021783753.1 glutathione synthase -
  GST84_RS24645 (GST84_24305) - 5331958..5332863 (+) 906 WP_021783752.1 energy transducer TonB -
  GST84_RS24650 (GST84_24310) - 5333903..5334472 (+) 570 WP_021783751.1 YqgE/AlgH family protein -
  GST84_RS24655 (GST84_24315) ruvX 5334472..5334897 (+) 426 WP_003249316.1 Holliday junction resolvase RuvX -
  GST84_RS24660 (GST84_24320) pyrR 5334947..5335465 (+) 519 WP_021783750.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14630.91 Da        Isoelectric Point: 6.4772

>NTDB_id=411066 GST84_RS24635 WP_021783754.1 5330273..5330674(-) (pilG) [Pseudomonas putida strain PP27]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAPQQHVP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=411066 GST84_RS24635 WP_021783754.1 5330273..5330674(-) (pilG) [Pseudomonas putida strain PP27]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGCTGCTCGGTGAAGC
GGGTTGCGAGGTGATCACTGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGCATCATTTTCG
TCGATGTGCTGATGCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGATACCCCG
GTTATCCTGCTGTCGTCGCGCGATGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGTTCCGATCAGTTCCTGACCAA
GCCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGTACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632

Multiple sequence alignment