Detailed information NTG0411060

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H1R14_RS11340
• Genome accession: NZ_CP059723
• Coordinates: 1963954..1964946 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BUCT2930
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1958954..1969946

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1R14_RS11320 (H1R14_11315)	otnK	1959729..1960991 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
H1R14_RS11325 (H1R14_11320)	ygbL	1960988..1961626 (+)	639	WP_001278994.1	aldolase	-
H1R14_RS11330 (H1R14_11325)	ygbM	1961631..1962407 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
H1R14_RS11335 (H1R14_11330)	ygbN	1962496..1963860 (+)	1365	WP_000104459.1	GntP family transporter	-
H1R14_RS11340 (H1R14_11335)	rpoS	1963954..1964946 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H1R14_RS11345 (H1R14_11340)	nlpD	1965009..1966103 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
H1R14_RS11350 (H1R14_11345)	pcm	1966288..1966914 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H1R14_RS11355 (H1R14_11350)	surE	1966908..1967669 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H1R14_RS11360 (H1R14_11355)	truD	1967650..1968699 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
H1R14_RS11365 (H1R14_11360)	ispF	1968696..1969175 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H1R14_RS11370 (H1R14_11365)	ispD	1969175..1969885 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=411060 H1R14_RS11340 WP_000081550.1 1963954..1964946(-) (rpoS) [Escherichia coli strain BUCT2930]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=411060 H1R14_RS11340 WP_000081550.1 1963954..1964946(-) (rpoS) [Escherichia coli strain BUCT2930]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715