Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H1R14_RS07640 Genome accession   NZ_CP059723
Coordinates   1181608..1183035 (+) Length   475 a.a.
NCBI ID   WP_095157441.1    Uniprot ID   -
Organism   Escherichia coli strain BUCT2930     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1176608..1188035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R14_RS07605 (H1R14_07600) - 1176788..1177402 (+) 615 Protein_1172 IS3-like element ISCfr6 family transposase -
  H1R14_RS07610 (H1R14_07605) - 1177395..1177547 (-) 153 Protein_1173 transposase domain-containing protein -
  H1R14_RS07615 (H1R14_07610) - 1177601..1177783 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  H1R14_RS07620 (H1R14_07615) tmaR 1177884..1178213 (-) 330 WP_000450409.1 DUF496 family protein -
  H1R14_RS07625 (H1R14_07620) yeeA 1178385..1179443 (-) 1059 WP_001200890.1 FUSC family protein -
  H1R14_RS07630 (H1R14_07625) sbmC 1179641..1180114 (-) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  H1R14_RS07635 (H1R14_07630) dacD 1180233..1181399 (-) 1167 WP_021567437.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H1R14_RS07640 (H1R14_07635) sbcB 1181608..1183035 (+) 1428 WP_095157441.1 exodeoxyribonuclease I Machinery gene
  H1R14_RS07645 (H1R14_07640) tsuB 1183078..1183305 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H1R14_RS07650 (H1R14_07645) tsuA 1183319..1184377 (-) 1059 WP_000492306.1 thiosulfate utilization transporter TsuA/YeeE -
  H1R14_RS07655 (H1R14_07650) plaP 1184556..1185914 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H1R14_RS07660 (H1R14_07655) yoeI 1185904..1185966 (-) 63 WP_010723108.1 membrane protein YoeI -
  H1R14_RS07665 (H1R14_07660) yeeY 1186181..1187110 (-) 930 WP_024194602.1 LysR substrate-binding domain-containing protein -
  H1R14_RS07670 (H1R14_07665) yeeZ 1187156..1187980 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54502.79 Da        Isoelectric Point: 5.4720

>NTDB_id=411046 H1R14_RS07640 WP_095157441.1 1181608..1183035(+) (sbcB) [Escherichia coli strain BUCT2930]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLYTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNTAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=411046 H1R14_RS07640 WP_095157441.1 1181608..1183035(+) (sbcB) [Escherichia coli strain BUCT2930]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCTAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTATACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACA
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTTTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment