Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EC042_RS02660 Genome accession   NC_017626
Coordinates   558656..559261 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli 042     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 553656..564261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC042_RS02630 (EC042_0504) rsmS 554361..554522 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  EC042_RS02635 (EC042_0505) priC 554536..555063 (-) 528 WP_000844856.1 primosomal replication protein N'' -
  EC042_RS02640 (EC042_0506) ybaN 555133..555510 (+) 378 WP_001188905.1 DUF454 family protein -
  EC042_RS02645 (EC042_0507) apt 555663..556214 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EC042_RS02650 (EC042_0508) dnaX 556343..558274 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  EC042_RS02655 (EC042_0509) ybaB 558327..558656 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EC042_RS02660 (EC042_0510) recR 558656..559261 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EC042_RS02665 (EC042_0511) htpG 559371..561245 (+) 1875 WP_000678202.1 molecular chaperone HtpG -
  EC042_RS02670 (EC042_0512) adk 561426..562070 (+) 645 WP_001220233.1 adenylate kinase -
  EC042_RS02675 (EC042_0513) hemH 562202..563164 (+) 963 WP_001250117.1 ferrochelatase -
  EC042_RS02680 (EC042_0514) aes 563161..564120 (-) 960 WP_000801809.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=41102 EC042_RS02660 WP_001195025.1 558656..559261(+) (recR) [Escherichia coli 042]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=41102 EC042_RS02660 WP_001195025.1 558656..559261(+) (recR) [Escherichia coli 042]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment