Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   H3V20_RS05875 Genome accession   NZ_CP059709
Coordinates   1108776..1109159 (+) Length   127 a.a.
NCBI ID   WP_002918422.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1103776..1114159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3V20_RS05855 (H3V20_05855) - 1103855..1105789 (-) 1935 WP_182101490.1 ribonuclease R family protein -
  H3V20_RS05860 (H3V20_05860) ilvC 1105908..1106930 (+) 1023 WP_032581040.1 ketol-acid reductoisomerase -
  H3V20_RS05865 (H3V20_05865) - 1106934..1108016 (+) 1083 WP_146314506.1 divergent polysaccharide deacetylase family protein -
  H3V20_RS05870 (H3V20_05870) dprA 1108006..1108779 (+) 774 WP_002918419.1 DNA-processing protein DprA Machinery gene
  H3V20_RS05875 (H3V20_05875) dprB 1108776..1109159 (+) 384 WP_002918422.1 Holliday junction resolvase RuvX Machinery gene
  H3V20_RS05880 (H3V20_05880) - 1109188..1110027 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  H3V20_RS05885 (H3V20_05885) msrA 1110203..1110700 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  H3V20_RS05890 (H3V20_05890) ppa 1110742..1111260 (-) 519 WP_002867724.1 inorganic diphosphatase -
  H3V20_RS05895 (H3V20_05895) adk 1111270..1111848 (-) 579 WP_002859580.1 adenylate kinase -
  H3V20_RS05900 (H3V20_05900) aspS 1111845..1113596 (-) 1752 WP_182101491.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14188.71 Da        Isoelectric Point: 9.0848

>NTDB_id=411016 H3V20_RS05875 WP_002918422.1 1108776..1109159(+) (dprB) [Campylobacter jejuni strain C41]
MRALALDIGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=411016 H3V20_RS05875 WP_002918422.1 1108776..1109159(+) (dprB) [Campylobacter jejuni strain C41]
ATGAGAGCTTTGGCTTTAGATATAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGAATACGGCATAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449