Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GST86_RS02560 | Genome accession | NZ_CP047148 |
| Coordinates | 566029..566574 (+) | Length | 181 a.a. |
| NCBI ID | WP_003255446.1 | Uniprot ID | I7CBQ6 |
| Organism | Pseudomonas putida strain PP2323 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 561029..571574
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GST86_RS02545 (GST86_02540) | bfr | 561124..561588 (+) | 465 | WP_003255449.1 | bacterioferritin | - |
| GST86_RS02550 (GST86_02545) | uvrA | 561661..564495 (-) | 2835 | WP_010951778.1 | excinuclease ABC subunit UvrA | - |
| GST86_RS02555 (GST86_02550) | - | 564625..566019 (+) | 1395 | WP_010951779.1 | MFS transporter | - |
| GST86_RS02560 (GST86_02555) | ssb | 566029..566574 (+) | 546 | WP_003255446.1 | single-stranded DNA-binding protein | Machinery gene |
| GST86_RS02565 (GST86_02560) | - | 566665..568047 (-) | 1383 | WP_020192246.1 | PLP-dependent aminotransferase family protein | - |
| GST86_RS02570 (GST86_02565) | - | 568248..569033 (+) | 786 | WP_049588015.1 | TSUP family transporter | - |
| GST86_RS02575 (GST86_02570) | - | 569055..569816 (+) | 762 | WP_010951782.1 | SDR family NAD(P)-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20059.16 Da Isoelectric Point: 5.9286
>NTDB_id=411005 GST86_RS02560 WP_003255446.1 566029..566574(+) (ssb) [Pseudomonas putida strain PP2323]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 546 bp
>NTDB_id=411005 GST86_RS02560 WP_003255446.1 566029..566574(+) (ssb) [Pseudomonas putida strain PP2323]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGGGCCAGCAGCAGGGCGGCGACCCGTACAACCAAGGTGGCGGCAATTATGGTG
GTGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGGGCCAGCAGCAGGGCGGCGACCCGTACAACCAAGGTGGCGGCAATTATGGTG
GTGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.831 |
100 |
0.575 |
| ssb | Glaesserella parasuis strain SC1401 |
47.12 |
100 |
0.497 |
| ssb | Neisseria meningitidis MC58 |
48.634 |
100 |
0.492 |
| ssb | Neisseria gonorrhoeae MS11 |
48.634 |
100 |
0.492 |