Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ERH_RS01790 Genome accession   NC_015601
Coordinates   378884..380683 (+) Length   599 a.a.
NCBI ID   WP_003775546.1    Uniprot ID   E7FXK4
Organism   Erysipelothrix rhusiopathiae str. Fujisawa     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 373884..385683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERH_RS01745 (ERH_0342) gatB 374373..375788 (+) 1416 WP_013852626.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  ERH_RS01750 (ERH_0343) - 375827..376504 (+) 678 WP_003775548.1 hypothetical protein -
  ERH_RS01755 (ERH_0344) - 376594..377802 (+) 1209 WP_013852627.1 O-antigen ligase family protein -
  ERH_RS01790 (ERH_0345) pepF 378884..380683 (+) 1800 WP_003775546.1 oligoendopeptidase F Regulator
  ERH_RS01795 (ERH_0346) - 380741..381133 (-) 393 WP_003775545.1 CoA-binding protein -
  ERH_RS01800 (ERH_0347) - 381130..381732 (-) 603 WP_003775544.1 dienelactone hydrolase family protein -
  ERH_RS01805 (ERH_0348) - 381803..383680 (-) 1878 WP_013852628.1 BglG family transcription antiterminator -
  ERH_RS01810 (ERH_0349) - 383744..384562 (-) 819 WP_003775540.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  ERH_RS01815 (ERH_0350) - 384555..385325 (-) 771 WP_003775537.1 PTS sugar transporter subunit IIC -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68618.43 Da        Isoelectric Point: 4.3664

>NTDB_id=41100 ERH_RS01790 WP_003775546.1 378884..380683(+) (pepF) [Erysipelothrix rhusiopathiae str. Fujisawa]
MSDKYELPLRSEVDIKDTWDLTPMFKDDDAWNTEFDAIQNDLSEVAAYRGTLTKSAESLLAGLKFRDELSYRIEFLYVYA
HLSFDVDTTNPKYQAMNARVQSLLAQFGSSFSFYEAEILSADEAVIREYLESNEALSLYNHEFDRLFKSRPHILSEKEER
ILASLGEIFGVSSQTFGMLNNADIQFPTIKDESGNDVQLSHGRYSLLMESADRRVREDAFKAMQTTYGNLKNTLASTLSG
NVKVHNFNATIRNYASARQAALAANNIDEEVYDSLLEGIHNNINLLHDYVALREEALGIDDIQMYDIYVPMVDEVDLKFT
YEEAQEVILDALSVLGEEYCAVLKRAFDERWIDVVENKGKRSGAYSSGTYGSAPYILLNWQENIDNVFTLAHELGHSVHS
YFTRKYQPYIYGDYSIFVAEVASTTNENLLLNYLLDQYEDPKVRAYLLNHYLDTVKGTVFRQTQFAEFEHLIHKSDQEGV
ALTADYLIESYYKLNQFYYGESISTEEIGYEWARIPHFYYNYYVYQYATGFSAATLFSETIYNGGDATPYLDFLKSGSSD
YPINVLRKAGVDMTESTAVDTTLEKFGERMAELRTLLVK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=41100 ERH_RS01790 WP_003775546.1 378884..380683(+) (pepF) [Erysipelothrix rhusiopathiae str. Fujisawa]
ATGTCGGATAAATATGAATTACCACTTCGTAGTGAAGTGGATATAAAAGATACATGGGATTTAACACCGATGTTTAAAGA
TGATGACGCATGGAATACAGAATTTGATGCGATTCAAAATGACTTAAGTGAAGTGGCTGCATACCGTGGTACTTTAACGA
AAAGCGCTGAAAGTTTGTTAGCGGGTCTTAAGTTTCGTGATGAATTAAGTTATCGTATTGAGTTTTTATATGTTTATGCA
CATTTAAGTTTTGATGTCGATACCACAAACCCTAAGTATCAAGCAATGAATGCGCGCGTGCAATCGCTTCTTGCGCAATT
TGGATCAAGTTTTTCGTTCTATGAAGCAGAGATTTTATCTGCCGATGAAGCTGTAATTCGAGAATATCTTGAATCGAATG
AAGCACTCAGTTTATATAATCATGAATTTGATCGTCTTTTCAAATCAAGACCACATATTCTTAGTGAAAAAGAAGAACGC
ATTCTTGCCTCATTAGGAGAAATCTTTGGTGTTTCTTCGCAGACATTTGGCATGTTGAATAATGCAGATATTCAATTCCC
TACAATTAAAGATGAATCGGGAAATGATGTTCAATTATCACACGGTCGTTATTCACTGTTAATGGAAAGTGCAGATCGAC
GTGTTCGTGAAGATGCTTTCAAAGCGATGCAAACAACTTATGGTAATTTAAAGAATACTCTTGCAAGTACGCTGTCGGGA
AATGTTAAGGTTCATAATTTCAATGCAACAATCCGTAATTATGCGTCGGCTCGTCAAGCTGCTCTTGCCGCAAATAATAT
TGACGAAGAAGTTTATGATTCCCTTTTAGAAGGAATTCATAATAATATTAACTTACTGCATGATTATGTAGCCCTTCGTG
AAGAGGCATTGGGTATTGATGATATTCAAATGTATGATATTTATGTCCCAATGGTTGATGAAGTGGATTTGAAGTTTACG
TATGAAGAAGCACAAGAAGTGATTTTGGACGCATTGAGTGTTCTTGGAGAAGAATATTGTGCTGTGTTGAAACGTGCCTT
TGATGAACGCTGGATTGATGTTGTTGAGAATAAAGGAAAACGATCGGGAGCCTATTCTTCAGGTACTTATGGAAGTGCAC
CGTATATTCTTTTAAACTGGCAAGAAAATATAGATAATGTGTTTACTCTTGCTCATGAGCTTGGACACAGTGTTCACTCG
TACTTTACGCGTAAGTATCAACCTTATATTTACGGAGATTATTCTATTTTTGTTGCTGAAGTTGCTTCCACAACGAATGA
GAATTTGCTGTTGAATTATTTGTTGGATCAATATGAGGATCCAAAGGTTCGTGCTTACTTGTTGAATCACTATTTAGACA
CGGTTAAAGGCACGGTGTTCCGTCAAACGCAGTTTGCTGAGTTTGAACACCTTATTCATAAATCAGACCAAGAGGGCGTT
GCTTTAACGGCTGATTATCTGATTGAGTCTTACTATAAACTCAATCAATTCTATTATGGTGAATCAATCAGCACTGAAGA
AATTGGTTATGAGTGGGCACGCATCCCTCATTTCTACTACAATTACTATGTTTACCAATATGCTACAGGATTTAGTGCAG
CAACTTTATTCAGTGAAACAATATATAATGGTGGTGATGCGACACCTTATCTTGATTTCTTGAAGTCAGGAAGTTCGGAT
TATCCTATTAATGTCCTTCGTAAGGCGGGCGTGGATATGACTGAATCGACTGCTGTTGATACTACGCTTGAGAAATTTGG
CGAACGTATGGCTGAATTACGAACATTACTTGTAAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-582)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E7FXK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.241

98.998

0.487

Multiple sequence alignment