Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GSR61_RS09380 Genome accession   NZ_CP047142
Coordinates   1904453..1906249 (+) Length   598 a.a.
NCBI ID   WP_065990697.1    Uniprot ID   A0AB37DK76
Organism   Lactobacillus crispatus strain C25     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1899453..1911249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSR61_RS09355 (GSR61_09390) - 1900361..1900738 (-) 378 WP_065990693.1 hypothetical protein -
  GSR61_RS09360 (GSR61_09395) - 1900883..1901434 (+) 552 WP_065990694.1 GNAT family N-acetyltransferase -
  GSR61_RS09365 (GSR61_09400) - 1901755..1902297 (+) 543 WP_256097587.1 PBECR4 domain-containing protein -
  GSR61_RS09370 (GSR61_09405) - 1902294..1902983 (-) 690 WP_005718174.1 DUF554 domain-containing protein -
  GSR61_RS09375 (GSR61_09410) - 1903048..1904286 (-) 1239 WP_065990695.1 LCP family protein -
  GSR61_RS09380 (GSR61_09415) pepF 1904453..1906249 (+) 1797 WP_065990697.1 oligoendopeptidase F Regulator
  GSR61_RS09385 (GSR61_09420) - 1906308..1906502 (+) 195 WP_065990698.1 hypothetical protein -
  GSR61_RS09390 (GSR61_09425) - 1906650..1906865 (+) 216 WP_005723825.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  GSR61_RS09395 (GSR61_09430) - 1906869..1907276 (+) 408 WP_065990699.1 type II toxin-antitoxin system death-on-curing family toxin -
  GSR61_RS09400 (GSR61_09435) - 1907856..1908974 (+) 1119 WP_065990700.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  GSR61_RS09405 (GSR61_09440) - 1909033..1909509 (+) 477 WP_005718152.1 S-ribosylhomocysteine lyase -
  GSR61_RS09410 (GSR61_09445) - 1909595..1911109 (-) 1515 WP_065990701.1 L-lactate permease -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67930.88 Da        Isoelectric Point: 4.7026

>NTDB_id=410981 GSR61_RS09380 WP_065990697.1 1904453..1906249(+) (pepF) [Lactobacillus crispatus strain C25]
MAIPNRNEVPEELKWDLTRIFKNDEEWEQAYAAAQEKVDQLGELKGTLAKSGKDLYEGLTKILAVKREVENIYVYATMSS
DVDTANSHYLGYVSRVQSLANQFEAATSFINPEILSIPSDKLAEFKQAEPRLKNYAHYLEMITNKRPHTLPAEQEKLIAD
AGDALGVSENTFNVLTNSDMEYGYVQDDDGNMEQLSDGLYSLLIQSQNRDVRKGAFDTLYATYGQFQNSLASTLSGVVKK
HNYNAKAHKYNSARQAALAANGVPEAVYDTLIKEVDSHLDLLHRYVALRKKILGLKDLQMWDMYVPLTGKPSLSYDFEEA
KEVAKKALKPLGEDYLKHVDYIFNNRVIDPVESKGKVTGAYSGGAYDTDPYELLNWEDNIDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDHITDPKTRAFILNYYLDSFKGTLFRQTQFAVFEQFIHEADAKGEPLTA
DTLDDVYSQINQHYYGDSVEPGGDIALEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGTPAERDAYLGFLKAGSSDY
PTEIMKRAGVDMTKPDYLEDAFKTFEKRLNEFENLIEK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=410981 GSR61_RS09380 WP_065990697.1 1904453..1906249(+) (pepF) [Lactobacillus crispatus strain C25]
ATGGCGATACCAAACAGAAATGAAGTCCCAGAAGAACTTAAGTGGGATTTGACCCGAATTTTTAAAAATGATGAAGAATG
GGAACAGGCCTATGCAGCTGCCCAAGAAAAAGTCGATCAACTCGGTGAATTAAAAGGCACATTAGCAAAATCTGGCAAGG
ATTTGTACGAAGGTTTAACCAAGATTTTGGCCGTTAAGCGCGAGGTGGAAAATATTTATGTTTATGCCACCATGTCCAGT
GATGTTGATACGGCTAATTCACATTATCTAGGCTACGTCAGCCGAGTGCAAAGCTTAGCTAACCAATTTGAAGCCGCTAC
TAGTTTTATTAACCCAGAAATCTTGAGCATCCCTAGTGACAAGCTAGCTGAATTTAAGCAAGCTGAACCAAGATTAAAGA
ATTACGCTCACTACTTGGAAATGATTACTAATAAGCGCCCTCACACCCTGCCAGCTGAACAAGAAAAATTAATCGCTGAC
GCTGGGGATGCTTTGGGCGTTTCCGAAAATACTTTTAACGTTTTGACCAATTCCGACATGGAATACGGCTACGTCCAAGA
TGACGATGGCAATATGGAACAATTGTCCGATGGTTTGTACTCATTATTAATTCAATCACAAAACCGTGACGTCAGAAAAG
GTGCCTTTGATACGCTCTATGCCACATACGGTCAATTTCAAAATTCGCTAGCTTCAACCTTGTCCGGCGTTGTGAAAAAG
CACAACTATAACGCTAAAGCACACAAATATAACTCTGCTCGCCAAGCTGCCTTAGCTGCAAATGGCGTACCTGAAGCAGT
TTACGATACTTTAATTAAAGAAGTTGATTCTCACCTTGATCTGCTTCACCGTTATGTTGCTTTGCGTAAGAAGATCTTGG
GCCTAAAAGACCTACAAATGTGGGACATGTATGTGCCGCTAACTGGGAAGCCTTCTCTTTCTTATGACTTTGAAGAAGCG
AAGGAAGTTGCTAAAAAAGCATTGAAGCCATTGGGCGAAGACTACTTAAAGCATGTTGACTACATCTTCAATAACCGCGT
AATCGATCCGGTTGAATCAAAAGGCAAGGTAACTGGGGCTTATTCTGGTGGTGCTTATGATACTGACCCATATGAACTGC
TCAACTGGGAAGATAATATTGACTCACTTTATACCTTAGTTCACGAAACTGGTCACTCCGTGCACTCTTGGTACACCCGT
AATACCCAGCCTTACGTTTATGGCGACTACCCAATCTTCGTTGCTGAAATTGCTTCAACTACTAACGAAAATATTTTGAC
GGAATACTTCTTAGACCACATTACTGATCCCAAGACACGTGCGTTCATCTTGAACTACTACCTCGACTCATTCAAGGGAA
CTTTGTTTAGACAAACGCAATTCGCGGTGTTTGAACAATTTATCCATGAAGCCGACGCTAAGGGTGAACCGCTAACCGCT
GATACCTTGGATGATGTCTATAGTCAAATTAACCAACACTACTACGGCGATAGCGTTGAACCAGGCGGCGATATTGCCCT
TGAATGGTCACGAATTCCACACTTCTACTACAATTTCTATGTGTACCAATATGCGACTGGCTTTGCGGCTGCAACGGCAT
TAGCCAACAAGGTGGTTCATGGAACGCCTGCTGAGAGGGATGCCTACCTTGGCTTCCTTAAAGCTGGTTCAAGTGATTAC
CCAACTGAGATCATGAAGCGTGCCGGCGTGGACATGACCAAGCCAGACTACTTGGAGGATGCATTCAAGACTTTTGAAAA
GCGGTTGAATGAATTTGAGAATTTGATTGAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.189

99.331

0.518

Multiple sequence alignment