Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SGPB_RS09855 Genome accession   NC_015600
Coordinates   2006833..2007546 (+) Length   237 a.a.
NCBI ID   WP_013852323.1    Uniprot ID   F5X3S5
Organism   Streptococcus pasteurianus ATCC 43144     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2001833..2012546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS09840 - 2002687..2003019 (+) 333 WP_043910338.1 hypothetical protein -
  SGPB_RS09845 (SGPB_1935) treC 2002969..2004648 (-) 1680 WP_013852321.1 alpha,alpha-phosphotrehalase -
  SGPB_RS09850 (SGPB_1936) treP 2004663..2006636 (-) 1974 WP_013852322.1 PTS system trehalose-specific EIIBC component -
  SGPB_RS09855 (SGPB_1937) treR 2006833..2007546 (+) 714 WP_013852323.1 trehalose operon repressor Regulator
  SGPB_RS09860 (SGPB_1938) - 2007956..2008306 (-) 351 Protein_1951 isopeptide-forming domain-containing fimbrial protein -
  SGPB_RS09865 (SGPB_1939) ruvB 2009134..2010132 (-) 999 WP_013852324.1 Holliday junction branch migration DNA helicase RuvB -
  SGPB_RS09870 (SGPB_1940) nrdG 2010261..2010875 (-) 615 WP_003066866.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  SGPB_RS09875 (SGPB_1941) - 2010917..2011423 (-) 507 WP_013852325.1 GNAT family N-acetyltransferase -
  SGPB_RS11085 (SGPB_1942) - 2011435..2011596 (-) 162 WP_003066871.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27431.41 Da        Isoelectric Point: 7.3315

>NTDB_id=41095 SGPB_RS09855 WP_013852323.1 2006833..2007546(+) (treR) [Streptococcus pasteurianus ATCC 43144]
MKKYEQIFKDLEHDITSGIYQAGDYLPTENELTQIYHMSRDTIRKALSLLAEAGLIQKIHGSGSQVIKHEQIDFPVSQLT
SYKELVDAHHINSKTNVIAIDKLIVDEKLATLTGFNKNNLVWRIIRQRVVDGTASVLDIDYLDKKIVPNMTREIAEQSIY
DYLENQLHLIIAYAQKEITIDQITNRDKLLLDIGAEHHVVSVKSKVYLANKHQFQFTESRHKLEKFRFVDFATRKPQ

Nucleotide


Download         Length: 714 bp        

>NTDB_id=41095 SGPB_RS09855 WP_013852323.1 2006833..2007546(+) (treR) [Streptococcus pasteurianus ATCC 43144]
ATGAAAAAATACGAACAAATCTTTAAAGACCTTGAACACGATATTACCTCTGGCATTTACCAAGCTGGTGACTATCTCCC
CACCGAAAACGAGCTAACCCAAATCTACCATATGAGCCGTGACACTATCCGCAAAGCGCTTAGTCTCCTTGCTGAAGCAG
GGCTCATCCAGAAAATTCACGGTTCTGGCTCTCAAGTCATTAAGCACGAGCAGATTGATTTTCCCGTTTCACAGCTCACA
AGCTATAAAGAGCTGGTCGACGCTCACCATATCAATTCCAAAACCAATGTCATTGCCATTGATAAACTTATCGTTGATGA
AAAATTAGCTACGCTGACTGGTTTCAATAAAAATAACCTTGTCTGGCGAATCATTCGCCAACGTGTCGTTGACGGCACCG
CTTCTGTCCTTGACATTGATTATTTAGACAAAAAAATCGTGCCAAATATGACACGAGAAATCGCCGAACAATCCATTTAC
GATTACCTTGAAAACCAACTCCACCTCATCATCGCTTACGCTCAAAAAGAAATCACCATTGACCAGATAACCAACCGTGA
CAAACTACTCCTTGACATCGGTGCCGAACACCACGTTGTCTCTGTCAAATCAAAAGTTTACCTCGCCAACAAACACCAAT
TCCAATTCACCGAAAGCAGACACAAACTCGAAAAATTCCGCTTCGTTGACTTCGCAACCCGAAAACCACAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5X3S5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

71.795

98.734

0.709

Multiple sequence alignment