Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GSR62_RS01800 Genome accession   NZ_CP047141
Coordinates   384893..386263 (+) Length   456 a.a.
NCBI ID   WP_010688530.1    Uniprot ID   -
Organism   Ligilactobacillus animalis strain P38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 379893..391263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSR62_RS01775 (GSR62_01770) - 380899..381570 (+) 672 WP_066024209.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  GSR62_RS01780 (GSR62_01775) - 381624..382958 (-) 1335 WP_066024210.1 C1 family peptidase -
  GSR62_RS01785 (GSR62_01780) rpiA 383145..383831 (-) 687 WP_010688533.1 ribose-5-phosphate isomerase RpiA -
  GSR62_RS01790 (GSR62_01785) - 383856..384143 (-) 288 WP_010688532.1 GNAT family N-acetyltransferase -
  GSR62_RS01795 (GSR62_01790) - 384280..384816 (+) 537 WP_066024211.1 dUTP diphosphatase -
  GSR62_RS01800 (GSR62_01795) radA 384893..386263 (+) 1371 WP_010688530.1 DNA repair protein RadA Machinery gene
  GSR62_RS01805 (GSR62_01800) - 386282..387391 (+) 1110 WP_010688529.1 PIN/TRAM domain-containing protein -
  GSR62_RS01810 (GSR62_01805) gltX 387480..388970 (+) 1491 WP_010688528.1 glutamate--tRNA ligase -
  GSR62_RS01815 (GSR62_01810) cysS 389362..390771 (+) 1410 WP_066024212.1 cysteine--tRNA ligase -
  GSR62_RS01820 (GSR62_01815) - 390773..391168 (+) 396 WP_010688526.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49309.65 Da        Isoelectric Point: 6.3677

>NTDB_id=410947 GSR62_RS01800 WP_010688530.1 384893..386263(+) (radA) [Ligilactobacillus animalis strain P38]
MAKVKTRYVCQNCGYVSPRYLGRCPNCSEWNTLVEEVEQKSATVKAAPRVTLTGTTNTPQKIDTIEISQTPRVDTKNGEL
NRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGSLADQGGKLLYVSGEESANQIKMRAQRLGVSGSEFYLYPETDMGSIL
QNIEDLKPDYVIIDSVQTMQMPEVTSAVGSVAQIREVTAALMQIAKTNGITIFIVGHVTKGGAIAGPKILEHMVDTVLYF
EGDMHRTYRILRAVKNRFGSTNEIGVFEMRDGGLVEVPNPSEIFLEERLSGATGSAVVVSMEGTRPILAEIQALVTPTAF
GNAKRTTTGLDHNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAMSLVSSYRDQQTAPDDCFIGELGLT
GEIRRVTRIDQRISEAAKLGFKRVFIPQNNLNGLELPTNIDVVGVKTISEALRHVF

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=410947 GSR62_RS01800 WP_010688530.1 384893..386263(+) (radA) [Ligilactobacillus animalis strain P38]
ATGGCAAAAGTCAAAACTAGATATGTATGTCAAAACTGTGGCTATGTATCACCACGCTATTTGGGGCGGTGTCCTAACTG
TAGCGAATGGAACACTTTAGTTGAAGAAGTCGAACAAAAAAGTGCGACCGTTAAAGCAGCACCACGCGTTACTTTGACAG
GAACAACGAATACCCCACAAAAGATCGACACGATCGAGATCTCACAGACACCTAGAGTTGATACGAAAAACGGTGAATTG
AATCGTGTTTTAGGTGGCGGTGTCGTTCCTGGTTCAATGGTCTTGATCGGGGGCGACCCTGGGATCGGTAAATCAACGTT
ACTTTTACAAGTTTCGGGAAGTTTAGCCGATCAAGGGGGGAAATTGCTCTACGTTTCGGGTGAAGAAAGTGCCAACCAGA
TCAAGATGCGTGCCCAACGCTTGGGAGTCTCAGGTAGTGAATTTTACCTTTACCCCGAGACCGATATGGGAAGTATCTTA
CAAAATATCGAAGACTTAAAACCAGACTATGTCATCATCGACTCGGTGCAAACGATGCAGATGCCAGAAGTTACTTCAGC
AGTCGGAAGTGTGGCGCAGATCCGCGAGGTGACCGCTGCTTTGATGCAAATTGCTAAGACAAATGGGATCACGATCTTTA
TCGTTGGTCACGTGACTAAGGGTGGCGCGATCGCCGGACCGAAGATCTTAGAGCATATGGTCGATACGGTGTTGTACTTT
GAAGGCGATATGCATCGCACTTACCGGATCTTACGGGCAGTCAAAAATCGTTTCGGTTCGACTAATGAGATCGGCGTGTT
TGAGATGCGCGATGGTGGTCTAGTTGAAGTACCTAATCCATCCGAGATCTTTTTAGAAGAGCGCTTGAGTGGCGCAACTG
GTTCGGCGGTCGTGGTCTCAATGGAAGGAACACGGCCGATCTTAGCGGAGATCCAAGCGTTAGTCACCCCAACTGCATTT
GGCAATGCTAAGCGAACAACGACGGGCTTAGATCATAATCGGGTCTCGTTGATCATGGCAGTGCTCGAAAAGCGGGCGGG
GCTACTTTTACAAAATCAAGATGCTTATTTGAAAGCAGCTGGGGGCGTTAAATTAGACGAACCAGCGATCGATCTAGCTA
TCGCGATGAGTTTGGTGTCGAGTTATCGTGACCAACAAACTGCACCAGATGATTGTTTTATCGGTGAATTAGGTTTGACC
GGTGAGATCAGACGGGTGACCCGGATCGACCAAAGAATATCTGAAGCAGCTAAATTAGGCTTTAAACGGGTCTTTATTCC
CCAAAATAATTTAAATGGTCTGGAATTGCCAACTAATATCGATGTGGTTGGCGTTAAGACGATCAGTGAAGCTTTACGGC
ATGTTTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

67.982

100

0.68
  radA Streptococcus pneumoniae D39

67.982

100

0.68
  radA Streptococcus pneumoniae R6

67.982

100

0.68
  radA Streptococcus pneumoniae TIGR4

67.982

100

0.68
  radA Streptococcus mitis SK321

67.763

100

0.678
  radA Streptococcus mitis NCTC 12261

67.763

100

0.678
  radA Bacillus subtilis subsp. subtilis str. 168

63.355

99.342

0.629

Multiple sequence alignment