Detailed information NTG0041094

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: SGPB_RS09795
• Genome accession: NC_015600
• Coordinates: 1991748..1994189 (-)
• Length: 813 a.a.
• NCBI ID: WP_013852315.1
• Uniprot ID: -
• Organism: Streptococcus pasteurianus ATCC 43144
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1986748..1999189

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGPB_RS09775 (SGPB_1923)	-	1987489..1988316 (+)	828	WP_013852312.1	hypothetical protein	-
SGPB_RS09780 (SGPB_1924)	-	1988346..1989623 (+)	1278	WP_013852313.1	toxic anion resistance protein	-
SGPB_RS09785 (SGPB_1925)	hslO	1989838..1990704 (+)	867	WP_003066821.1	Hsp33 family molecular chaperone HslO	-
SGPB_RS09790 (SGPB_1926)	dusB	1990697..1991674 (+)	978	WP_013852314.1	tRNA dihydrouridine synthase DusB	-
SGPB_RS09795 (SGPB_1927)	clpC	1991748..1994189 (-)	2442	WP_013852315.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
SGPB_RS09800 (SGPB_1928)	-	1994186..1994647 (-)	462	WP_003066826.1	CtsR family transcriptional regulator	-
SGPB_RS09805 (SGPB_1929)	-	1995321..1995785 (+)	465	WP_003066829.1	COG2426 family protein	-
SGPB_RS09810 (SGPB_1930)	tsf	1995914..1996951 (-)	1038	WP_013852316.1	translation elongation factor Ts	-
SGPB_RS09815 (SGPB_1931)	rpsB	1997063..1997830 (-)	768	WP_013852317.1	30S ribosomal protein S2	-

Sequence

Protein

• Length: 813 a.a.
• Molecular weight: 89937.30 Da
• Isoelectric Point: 5.7440

>NTDB_id=41094 SGPB_RS09795 WP_013852315.1 1991748..1994189(-) (clpC) [Streptococcus pasteurianus ATCC 43144]
MSEYSIKMQEVFSVAQYQAARFESPYLESWHVLLAMVAIHDSVAGLTFAEYQTKIAYEEYEAAAVLAIGKSPLTDVDRVH
FVEQSKALSDVLAFAESICQVTGGNEIGTEHVLYAMLLNLDLFATRLLEVAGFKNKEDGDAARLIDLRKSLARNAGFTKE
NIKAIHGLRKPKKATMGGAFSEMMKPQSTAGDLVDFTRDLTEMAGQGKLEPVIGREKEISRMVQVLSRKTKNNPVLVGEA
GVGKTALAYGLAQRIVNGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQIISDIEEDGHIILFIDEVHTIMGSGSG
IDSTLDAANILKPALARGTLHMVGATTQEEYQKHLEKDAALSRRFAKITIEEPSVEDAYQILLGLKKSYEDFHNVVISDE
AVLTAVKAAHRYLTSKNLPDSAIDLLDEASATVQGLVKKEAPATLTPADKAILEGDFKLATKLLKESRKKPNRKPTAVTE
DDIMATLSRLSGIPVEKMTQADSKKYLNLEKELHKRVIGQDSAISAISRAIRRNQAGIRTGKRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQV
LDDGVLTDSRGRKVDFSNTIIIMTSNLGATALRDEKTVGFGARDMAHDYEAMQKRIMEELKKAYRPEFINRIDEKVVFHN
LTQENMRDVVKIMVKPLIATLAEKDITLKFQPSALKYLAEIGYDPEMGARPLRRTLQDKVEDELSELILSGELASGNTLK
IGVSKGQLKFDIA

Nucleotide

• Length: 2442 bp

>NTDB_id=41094 SGPB_RS09795 WP_013852315.1 1991748..1994189(-) (clpC) [Streptococcus pasteurianus ATCC 43144]
ATGAGTGAGTATTCGATAAAAATGCAAGAGGTTTTCAGTGTTGCTCAATACCAAGCAGCGCGTTTTGAAAGCCCATATTT
AGAAAGTTGGCACGTCCTTTTAGCTATGGTTGCTATCCATGACTCAGTCGCAGGGCTAACATTTGCGGAATACCAAACTA
AAATCGCCTATGAAGAATATGAAGCGGCAGCTGTTTTAGCCATTGGGAAATCACCGTTAACGGACGTTGACAGAGTTCAT
TTTGTAGAACAATCTAAAGCTCTTAGTGACGTTTTAGCATTTGCTGAGTCTATTTGTCAGGTGACTGGCGGTAACGAAAT
CGGGACAGAACATGTGCTTTATGCGATGTTGTTAAACCTTGATTTATTTGCCACACGTTTGTTAGAAGTTGCTGGTTTTA
AAAATAAAGAAGACGGTGACGCTGCTCGTTTGATTGATTTGCGTAAGAGTTTGGCACGTAATGCTGGTTTTACAAAGGAA
AATATCAAGGCTATTCATGGGCTTCGTAAGCCGAAAAAAGCGACAATGGGCGGTGCTTTTTCTGAAATGATGAAACCACA
GTCAACAGCGGGGGATTTGGTAGATTTCACGCGTGATTTGACAGAGATGGCAGGTCAAGGAAAATTAGAACCTGTTATCG
GTCGCGAAAAAGAAATTTCTCGTATGGTGCAGGTACTTAGCCGCAAAACGAAAAACAATCCAGTTTTAGTAGGGGAAGCT
GGTGTTGGTAAAACGGCTCTTGCTTACGGTTTGGCACAGCGAATTGTCAATGGTGCGATTCCGTATGAACTCCAAGACAT
GCGTGTTCTAGAGCTTGATATGATGAGCGTTGTGGCTGGTACGCGATTCCGTGGTGATTTTGAAGAACGTATGAACCAAA
TCATCTCAGATATTGAGGAAGACGGTCATATTATTCTTTTCATTGACGAAGTGCATACGATTATGGGTTCAGGCTCTGGA
ATTGACAGCACTTTGGATGCGGCTAATATTCTAAAACCAGCGCTTGCGCGTGGTACGCTTCATATGGTTGGTGCGACAAC
GCAAGAAGAATATCAAAAACATCTTGAAAAAGATGCGGCGCTTTCTCGCCGTTTTGCTAAGATTACCATTGAAGAACCAA
GTGTTGAAGATGCTTACCAAATCTTGCTTGGGTTAAAGAAATCATATGAAGATTTTCATAATGTGGTGATTTCTGACGAA
GCTGTTTTAACGGCTGTCAAAGCTGCGCATCGCTATTTGACAAGTAAAAATCTTCCTGACTCAGCGATTGATTTGCTTGA
TGAAGCAAGTGCAACGGTTCAAGGTTTGGTGAAAAAAGAAGCGCCAGCTACTTTGACACCTGCTGATAAAGCTATTTTGG
AAGGTGATTTCAAATTGGCAACGAAATTGCTGAAAGAGTCACGCAAGAAGCCAAATCGTAAACCAACTGCTGTGACAGAA
GATGATATTATGGCAACGCTCAGTCGTTTGTCAGGTATTCCTGTTGAGAAAATGACACAGGCAGATAGTAAGAAATATTT
GAACCTCGAAAAAGAACTCCATAAGCGTGTGATTGGCCAAGATTCAGCTATTTCAGCGATTAGTCGTGCTATTCGTCGTA
ATCAAGCGGGCATTCGTACAGGCAAACGTCCGATTGGGTCGTTTATGTTCTTGGGTCCAACGGGTGTTGGTAAAACAGAG
TTGGCTAAAGCACTAGCAGAACTGCTATTTGATGATGAATCTGCTCTTATCCGTTTTGATATGTCTGAGTATATGGAAAA
ATTTGCGGCGAGTCGTCTTAACGGAGCTCCTCCAGGATATGTCGGTTACGAAGAAGGTGGCGAATTGACTGAAAAAGTTC
GCAACAAACCTTATTCTGTGCTTCTATTTGACGAAGTTGAAAAAGCCCACCCAGATATTTTCAATGTGCTTCTCCAAGTG
TTGGATGACGGTGTGCTGACGGATAGTCGTGGTCGTAAAGTTGATTTTTCAAACACGATTATCATCATGACATCAAATCT
TGGGGCAACCGCTTTGCGTGATGAAAAGACAGTTGGTTTTGGTGCGCGTGATATGGCTCATGATTATGAGGCAATGCAAA
AACGTATCATGGAAGAACTCAAAAAAGCTTACCGACCTGAATTCATCAACCGTATTGATGAAAAGGTTGTTTTCCACAAC
TTAACTCAAGAAAATATGCGTGATGTCGTGAAAATCATGGTTAAACCATTGATTGCGACACTAGCTGAAAAAGATATTAC
GCTAAAATTCCAACCATCAGCATTGAAATATTTAGCCGAAATTGGATACGACCCAGAAATGGGAGCTCGTCCGCTTCGCC
GTACTCTGCAAGATAAAGTTGAAGATGAATTATCAGAGCTTATTCTATCAGGCGAATTGGCAAGTGGAAATACCCTTAAA
ATCGGCGTTTCTAAAGGGCAACTCAAATTTGATATTGCTTAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (543-714)

• ATPase family associated with various cellular activities (AAA) (AAA) (235-366)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (721-800)

• AAA lid domain (AAA_lid_9) (374-452)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	76.97	99.877	0.769
clpC	Streptococcus thermophilus LMG 18311	73.497	100	0.737
clpC	Streptococcus thermophilus LMD-9	73.374	100	0.736
clpC	Streptococcus pneumoniae TIGR4	67.857	99.877	0.678
clpC	Streptococcus pneumoniae Rx1	67.857	99.877	0.678
clpC	Streptococcus pneumoniae D39	67.857	99.877	0.678
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.341	100	0.507
clpC	Bacillus subtilis subsp. subtilis str. 168	43.682	100	0.446
clpE	Streptococcus pneumoniae TIGR4	45.639	78.967	0.36
clpE	Streptococcus pneumoniae Rx1	45.639	78.967	0.36
clpE	Streptococcus pneumoniae D39	45.639	78.967	0.36
clpE	Streptococcus pneumoniae R6	45.639	78.967	0.36