Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SGPB_RS09560 Genome accession   NC_015600
Coordinates   1940114..1941475 (-) Length   453 a.a.
NCBI ID   WP_041974187.1    Uniprot ID   A0AAW6YM29
Organism   Streptococcus pasteurianus ATCC 43144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1935114..1946475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS09540 (SGPB_1873) - 1935916..1937082 (-) 1167 WP_013852290.1 CynX/NimT family MFS transporter -
  SGPB_RS09545 (SGPB_1874) gltX 1937255..1938712 (-) 1458 WP_041974164.1 glutamate--tRNA ligase -
  SGPB_RS09550 (SGPB_1875) - 1938897..1939391 (-) 495 WP_013852291.1 LURP-one-related/scramblase family protein -
  SGPB_RS09555 (SGPB_1876) - 1939495..1939989 (-) 495 WP_003066696.1 beta-class carbonic anhydrase -
  SGPB_RS09560 (SGPB_1877) radA 1940114..1941475 (-) 1362 WP_041974187.1 DNA repair protein RadA Machinery gene
  SGPB_RS09565 - 1941493..1942026 (-) 534 Protein_1888 histidine phosphatase family protein -
  SGPB_RS09570 (SGPB_1879) - 1942057..1942503 (-) 447 WP_003066701.1 dUTP diphosphatase -
  SGPB_RS09575 (SGPB_1880) - 1942530..1943297 (-) 768 WP_003066703.1 epoxyqueuosine reductase QueH -
  SGPB_RS09580 (SGPB_1881) - 1944518..1944721 (-) 204 WP_003066706.1 cold-shock protein -
  SGPB_RS11590 (SGPB_1882) - 1944899..1945030 (-) 132 WP_013852293.1 hypothetical protein -
  SGPB_RS10835 - 1945439..1945555 (+) 117 Protein_1893 integrase -
  SGPB_RS11770 - 1945739..1945783 (+) 45 Protein_1894 integrase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49468.82 Da        Isoelectric Point: 6.2712

>NTDB_id=41093 SGPB_RS09560 WP_041974187.1 1940114..1941475(-) (radA) [Streptococcus pasteurianus ATCC 43144]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSIHYSRTKTGMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLSGIDIPDNIQVIGVTTVGEVLKKVFV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=41093 SGPB_RS09560 WP_041974187.1 1940114..1941475(-) (radA) [Streptococcus pasteurianus ATCC 43144]
ATCGCTAAGAAAAAAACAACATTTATTTGTCAGGAGTGTGGCTATCATTCTCCGAAATATTTGGGACGTTGTCCGAATTG
TTCGTCTTGGACGTCTTTTGTTGAAGAAGTTGAGGTGCAAGAAGTCAAAAATGCGCGTGTTAGTTTGACGGGTGAAAAGA
GTAAACCGACTAAGTTAAAGGATGTTAGCTCGATCCATTATTCACGCACCAAGACTGGCATGGATGAATTTAACCGCGTG
CTTGGTGGCGGTGTGGTGCCAGGTAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACGCTTCTTTTGCA
GGTATCTATTCAACTTGCAGATAAGGGAACAGTTCTTTACGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTACGTA
GTGAGCGTCTTGGCGACATTGACAATGAATTTTACCTTTATGCTGAAACGAATATGCAAGCCATTCGCGCACAGATTGAG
CAAATTCAGCCTGATTTCTTGATTATTGACTCGATTCAGACCATTATGAGCCCTGATATTTCTGGGGTCCAAGGGTCGGT
ATCACAAGTACGTGAAGTGACTGCAGAGTTGATGCAACTGGCTAAGACAAATAATATTGCAACCTTTATCGTTGGTCACG
TGACTAAGGAAGGGCAGCTTGCAGGACCGCGCATGCTTGAGCATATGGTGGATACAGTGCTTTATTTTGAAGGGGAACGT
CATCACACCTTCCGTATTTTACGTGCTGTGAAAAATCGTTTTGGTTCAACTAACGAAATCGGCATTTTTGAAATGCAATC
TGGTGGTCTTGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTAGAAGAACGTTTGGACGGTGCAACGGGGTCAGCTATCG
TGGTTACCATGGAAGGTAGCCGTCCAATTTTGGCGGAAGTCCAAGCTTTGGTAACGCCGACAGTCTTTGGAAATGCCAAA
CGCACCACGACAGGACTGGATTTTAACCGTGTTAGCCTTATTATGGCGGTGCTTGAAAAACGTTGTGGACTTTTATTGCA
AAATCAAGATGCTTATTTGAAATCGGCTGGTGGTGTTAAACTTGATGAGCCAGCGATTGATTTGGCAGTAGCGGTAGCCA
TTGCGTCAAGCTATAAAGAAAAGCCAACAAATCCACAGGAAGCCTTCATCGGTGAAATTGGTTTGACAGGCGAAATTCGT
CGTGTGACACGTATTGAGCAACGTATCAACGAAGCAGCAAAACTTGGTTTTACTAAAGTTTATGCTCCTAAAAACTCTCT
GTCAGGTATTGATATTCCAGACAATATTCAAGTCATTGGTGTGACAACTGTGGGCGAAGTCCTCAAAAAAGTTTTTGTGT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(72-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.717

99.779

0.885
  radA Streptococcus pneumoniae D39

88.717

99.779

0.885
  radA Streptococcus pneumoniae R6

88.717

99.779

0.885
  radA Streptococcus pneumoniae TIGR4

88.717

99.779

0.885
  radA Streptococcus mitis SK321

88.717

99.779

0.885
  radA Streptococcus mitis NCTC 12261

88.496

99.779

0.883
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62

Multiple sequence alignment