Detailed information NTG0410836

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: GQS55_RS05390
• Genome accession: NZ_CP047130
• Coordinates: 1231484..1232854 (-)
• Length: 456 a.a.
• NCBI ID: WP_159818668.1
• Uniprot ID: -
• Organism: Colwellia sp. 20A7
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1226484..1237854

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQS55_RS05380	raiA	1228502..1228840 (-)	339	WP_159818664.1	ribosome-associated translation inhibitor RaiA	-
GQS55_RS05385	-	1229125..1231308 (-)	2184	WP_236559832.1	S9 family peptidase	-
GQS55_RS05390	radA	1231484..1232854 (-)	1371	WP_159818668.1	DNA repair protein RadA	Machinery gene
GQS55_RS05395	-	1233062..1235512 (+)	2451	WP_159818670.1	PilZ domain-containing protein	-
GQS55_RS05400	serB	1235580..1236599 (-)	1020	WP_201294570.1	phosphoserine phosphatase SerB	-
GQS55_RS05405	-	1236647..1237300 (+)	654	WP_236559767.1	AhpA/YtjB family protein	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 49120.67 Da
• Isoelectric Point: 6.9924

>NTDB_id=410836 GQS55_RS05390 WP_159818668.1 1231484..1232854(-) (radA) [Colwellia sp. 20A7]
MAKTKAAYVCTDCGSEYSRWLGQCTDCKAWNTISEFRQAKLPARGGNFAGFAGAAHNEQAKVQTLDDIDLADLPRFSSGF
AEFDRVLGGGIVPGSAILIGGEPGAGKSTLLLQTMCTLATNMPALYITGEESLQQVAMRAKRLSLPTDKLKMLSETSVEN
ICQIAIKEQPKIIVIDSIQVMHMSDIQSAPGSVSQVRESAAYLTRFAKQYHVAILLVGHVTKDGSLAGPKVLEHCIDCSI
MLEGSTDSRYRTLRGNKNRFGAVNELGVFAMTGAGLKEVKNPSAIFLSRTEEQTAGSVVMVLWEGTRPLLVEIQALVDHS
ALGNPRRVAVGADQNRLSMLLAILHRHGGLQLNDQDVFVNVVGGIKVTETSIDLALILALVSSFKDNALPQDLVIFGEVG
LSGEIRPVPSGQERINEAAKHGFKRAIVPFNNMPKHAIEGMEVIGIKKLSEALEVI

Nucleotide

• Length: 1371 bp

>NTDB_id=410836 GQS55_RS05390 WP_159818668.1 1231484..1232854(-) (radA) [Colwellia sp. 20A7]
ATGGCTAAAACTAAAGCAGCCTATGTCTGTACAGACTGTGGTTCTGAATATTCACGCTGGTTAGGCCAATGTACTGACTG
TAAAGCATGGAACACTATTTCAGAATTTAGACAAGCAAAACTACCTGCTCGCGGTGGAAACTTTGCCGGATTTGCGGGGG
CGGCGCACAATGAACAAGCAAAGGTTCAAACCCTTGACGATATTGATTTAGCCGATTTACCTCGATTTTCATCTGGTTTC
GCTGAATTTGACCGTGTTCTTGGCGGAGGCATTGTTCCTGGAAGTGCTATTTTAATTGGTGGAGAGCCAGGAGCCGGAAA
AAGTACTTTACTGCTGCAGACCATGTGTACTTTAGCGACTAATATGCCTGCGTTATATATAACAGGTGAAGAATCACTAC
AGCAAGTTGCAATGCGTGCTAAACGCTTAAGTTTACCTACCGATAAATTAAAAATGCTGTCAGAAACAAGCGTTGAAAAT
ATTTGTCAAATTGCCATAAAAGAACAACCAAAAATTATTGTTATTGACTCTATTCAAGTAATGCACATGAGCGATATACA
ATCTGCACCAGGTAGTGTTTCACAAGTCAGAGAAAGCGCCGCTTATTTGACACGCTTTGCTAAACAATATCATGTCGCTA
TTTTATTAGTTGGTCATGTCACCAAAGACGGCTCTCTAGCTGGCCCGAAAGTATTAGAACATTGTATAGATTGTTCAATC
ATGCTTGAAGGAAGTACTGATTCACGTTATAGAACACTGCGCGGTAATAAAAACCGTTTTGGTGCTGTTAATGAGTTAGG
CGTTTTTGCTATGACAGGTGCCGGTTTAAAAGAGGTAAAGAATCCTTCTGCGATCTTCCTTAGTCGGACAGAAGAGCAAA
CAGCAGGAAGTGTAGTTATGGTGCTATGGGAAGGAACTCGCCCTTTATTGGTAGAGATTCAAGCCTTGGTTGATCATTCT
GCTTTAGGAAACCCGCGACGCGTTGCTGTTGGTGCAGATCAAAATAGATTATCAATGCTCTTGGCTATTCTGCACCGTCA
TGGTGGTCTTCAGCTTAACGACCAAGATGTATTCGTTAATGTTGTTGGCGGTATAAAAGTAACAGAAACAAGTATCGATT
TAGCATTAATTCTGGCATTAGTTTCTAGCTTTAAAGATAACGCATTACCGCAAGACTTAGTCATTTTTGGCGAAGTTGGT
TTATCAGGAGAAATACGACCTGTCCCGAGTGGCCAGGAACGAATAAATGAAGCTGCAAAGCATGGTTTTAAACGTGCAAT
AGTCCCCTTTAATAACATGCCTAAACACGCAATAGAAGGCATGGAAGTTATTGGTATCAAAAAATTAAGCGAAGCATTAG
AAGTAATATAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (347-432)

• AAA domain (AAA_25) (86-224)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	47.609	100	0.48
radA	Streptococcus pneumoniae Rx1	41.667	100	0.428
radA	Streptococcus pneumoniae D39	41.667	100	0.428
radA	Streptococcus pneumoniae R6	41.667	100	0.428
radA	Streptococcus pneumoniae TIGR4	41.667	100	0.428
radA	Streptococcus mitis NCTC 12261	41.667	100	0.428
radA	Streptococcus mitis SK321	41.756	100	0.428