Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GQR93_RS09505 Genome accession   NZ_CP047121
Coordinates   2017162..2018535 (-) Length   457 a.a.
NCBI ID   WP_003554714.1    Uniprot ID   A0A6G9Q6N5
Organism   Lentilactobacillus hilgardii strain FLUB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2012162..2023535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQR93_RS09485 (GQR93_09485) - 2012287..2012697 (-) 411 WP_003554704.1 Mini-ribonuclease 3 -
  GQR93_RS09490 (GQR93_09490) cysS 2012706..2014112 (-) 1407 WP_003554707.1 cysteine--tRNA ligase -
  GQR93_RS09495 (GQR93_09495) gltX 2014261..2015751 (-) 1491 WP_003554708.1 glutamate--tRNA ligase -
  GQR93_RS09500 (GQR93_09500) - 2015950..2017137 (-) 1188 WP_003554712.1 PIN/TRAM domain-containing protein -
  GQR93_RS09505 (GQR93_09505) radA 2017162..2018535 (-) 1374 WP_003554714.1 DNA repair protein RadA Machinery gene
  GQR93_RS09510 (GQR93_09510) - 2018643..2019182 (-) 540 WP_003554716.1 dUTP diphosphatase -
  GQR93_RS09515 (GQR93_09515) rpiA 2019328..2020011 (+) 684 WP_003554718.1 ribose-5-phosphate isomerase RpiA -
  GQR93_RS09520 (GQR93_09520) - 2020263..2021597 (+) 1335 WP_003554720.1 aminopeptidase C -
  GQR93_RS09525 (GQR93_09525) - 2021782..2022459 (-) 678 WP_035444851.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49349.76 Da        Isoelectric Point: 7.6833

>NTDB_id=410794 GQR93_RS09505 WP_003554714.1 2017162..2018535(-) (radA) [Lentilactobacillus hilgardii strain FLUB]
MAKVKTQFVCQNCGYISPRYLGRCPNCNEWNTLVEETIAPKSNSTRTAGLRRTGVDEVKPEPLSSVTFQSEPRFKTGMEE
LNRVLGGGVVPGSLILIGGDPGIGKSTLMLQVSGQLSRSGKILYVSGEESASQIKMRADRLDVDSKQLYVFPETDMNVIK
STISDMKPDAVVIDSVQTMQIPELQSATGSVAQIREVTADLMNIAKGQGITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHSYRILRTVKNRFGSTNELGVFEMMTDGLHEVTNPSEIFLEERLKDATGSAIVVSMEGTRPILVEIQALVTASVF
GNATRTATGLDRNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYKNRGTSPTECYVGELGLT
GEVRRVTRIEQRVSEAQKLGFKRVLVPANNLQGWTPPKGIDVVGVSTLSQALKLALG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=410794 GQR93_RS09505 WP_003554714.1 2017162..2018535(-) (radA) [Lentilactobacillus hilgardii strain FLUB]
TTGGCGAAAGTTAAAACCCAATTTGTATGTCAAAACTGCGGTTATATTTCACCGCGATATCTTGGACGGTGTCCTAACTG
TAACGAATGGAATACTTTGGTTGAAGAAACGATTGCGCCAAAGTCCAATTCAACCCGAACTGCCGGCCTAAGAAGGACGG
GTGTCGATGAGGTTAAGCCCGAACCACTCAGTAGTGTCACATTTCAGAGTGAGCCCCGTTTTAAGACTGGCATGGAAGAG
CTCAATCGGGTGCTTGGCGGTGGTGTCGTTCCCGGATCGTTAATCTTAATTGGCGGGGATCCTGGAATCGGCAAATCGAC
GCTGATGCTTCAAGTGTCAGGCCAATTGAGCAGGTCGGGTAAGATTTTATATGTTTCCGGTGAGGAAAGTGCCAGCCAGA
TAAAAATGCGTGCAGATCGATTAGATGTTGACAGTAAACAGCTGTACGTCTTTCCTGAGACCGATATGAATGTCATTAAA
AGTACGATCAGTGATATGAAGCCGGATGCCGTTGTCATTGATTCTGTTCAAACGATGCAGATCCCTGAGTTGCAGTCGGC
AACTGGTTCGGTTGCCCAAATTCGGGAAGTAACGGCTGATCTTATGAATATTGCAAAAGGTCAAGGAATTACGGTTTTTG
TTGTCGGTCATGTAACCAAGGGTGGCGCCATTGCCGGTCCTAAAATCTTGGAGCATATGGTTGACACGGTTCTTTATTTC
GAAGGAGATCTCCATCACTCATATAGAATTTTGAGAACGGTCAAAAATCGGTTTGGGTCTACAAATGAGCTGGGTGTTTT
TGAAATGATGACGGATGGCCTTCACGAAGTGACAAACCCTTCCGAAATCTTTTTGGAAGAGCGTCTTAAAGATGCCACCG
GGTCTGCAATCGTGGTGTCTATGGAGGGTACCCGTCCTATACTGGTTGAAATTCAAGCCCTGGTGACAGCTTCTGTTTTT
GGAAATGCGACTAGGACTGCTACTGGATTAGATCGAAACCGGGTGTCATTAATTATGGCGGTTCTTGAAAAACGTGCCGG
GCTTCTTTTACAAAATCAGGATGCCTATTTGAAAGCAGCTGGCGGTGTAAAACTGGATGAACCCGCCATTGATCTTGCGA
TTGCTGTTAGTATTGCTTCATCTTATAAAAATCGTGGTACAAGTCCAACTGAATGTTACGTTGGGGAATTGGGACTAACT
GGAGAGGTTCGCCGAGTTACTCGGATTGAGCAACGTGTTTCCGAAGCCCAAAAGTTAGGCTTTAAACGGGTTTTAGTTCC
TGCAAATAACTTGCAGGGATGGACACCGCCAAAGGGAATTGACGTTGTTGGTGTATCAACCTTATCGCAGGCGCTTAAGC
TGGCATTGGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-222)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9Q6N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

65.639

99.344

0.652
  radA Streptococcus mitis SK321

65.419

99.344

0.65
  radA Streptococcus pneumoniae Rx1

65.419

99.344

0.65
  radA Streptococcus pneumoniae TIGR4

65.419

99.344

0.65
  radA Streptococcus pneumoniae D39

65.419

99.344

0.65
  radA Streptococcus pneumoniae R6

65.419

99.344

0.65
  radA Bacillus subtilis subsp. subtilis str. 168

63.537

100

0.637

Multiple sequence alignment