Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   GE573_RS17000 Genome accession   NZ_CP047119
Coordinates   3289356..3289952 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus velezensis strain AK-0     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3284356..3294952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE573_RS16970 (GE573_03391) - 3284568..3285023 (+) 456 WP_007409622.1 flavodoxin -
  GE573_RS16975 (GE573_03392) dapD 3285105..3285815 (+) 711 WP_063095390.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  GE573_RS16980 (GE573_03393) - 3285886..3287010 (+) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  GE573_RS16985 (GE573_03394) - 3287071..3287316 (+) 246 WP_003154596.1 YkuS family protein -
  GE573_RS16990 (GE573_03395) - 3287350..3288156 (-) 807 WP_015417373.1 mechanosensitive ion channel family protein -
  GE573_RS16995 (GE573_03396) - 3288445..3288903 (+) 459 WP_053573393.1 TlpA disulfide reductase family protein -
  GE573_RS17000 (GE573_03397) rok 3289356..3289952 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  GE573_RS17005 (GE573_03398) - 3289973..3290965 (-) 993 WP_063095389.1 hypothetical protein -
  GE573_RS17010 (GE573_03399) - 3291111..3291713 (+) 603 WP_063095387.1 molybdenum cofactor guanylyltransferase -
  GE573_RS17015 (GE573_03400) - 3291765..3292784 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  GE573_RS17020 (GE573_03401) glp 3292802..3294094 (+) 1293 WP_063095385.1 gephyrin-like molybdotransferase Glp -
  GE573_RS17025 (GE573_03402) mobB 3294055..3294576 (+) 522 WP_033574614.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=410707 GE573_RS17000 WP_012117447.1 3289356..3289952(+) (rok) [Bacillus velezensis strain AK-0]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=410707 GE573_RS17000 WP_012117447.1 3289356..3289952(+) (rok) [Bacillus velezensis strain AK-0]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment