Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   GE573_RS16900 Genome accession   NZ_CP047119
Coordinates   3273490..3273954 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain AK-0     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3268490..3278954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE573_RS16880 (GE573_03374) - 3268970..3270790 (+) 1821 WP_021493759.1 PAS domain-containing protein -
  GE573_RS16885 (GE573_03375) - 3270771..3271984 (-) 1214 Protein_3293 aminotransferase A -
  GE573_RS16890 (GE573_03376) - 3272185..3272346 (-) 162 WP_007409608.1 hypothetical protein -
  GE573_RS16895 (GE573_03377) cheV 3272535..3273446 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  GE573_RS16900 (GE573_03378) kre 3273490..3273954 (-) 465 WP_003154622.1 YkyB family protein Regulator
  GE573_RS16905 (GE573_03379) - 3274077..3275369 (-) 1293 WP_127069765.1 MFS transporter -
  GE573_RS16910 (GE573_03380) - 3275445..3275939 (-) 495 WP_114354692.1 L,D-transpeptidase family protein -
  GE573_RS16915 (GE573_03381) - 3276014..3276877 (-) 864 WP_190664232.1 metallophosphoesterase -
  GE573_RS16920 (GE573_03382) fadH 3277021..3277785 (+) 765 WP_015417368.1 2,4-dienoyl-CoA reductase -
  GE573_RS19705 - 3277950..3278446 (+) 497 Protein_3301 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=410706 GE573_RS16900 WP_003154622.1 3273490..3273954(-) (kre) [Bacillus velezensis strain AK-0]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=410706 GE573_RS16900 WP_003154622.1 3273490..3273954(-) (kre) [Bacillus velezensis strain AK-0]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAGTCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment