Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   GE573_RS15105 Genome accession   NZ_CP047119
Coordinates   2942846..2943424 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain AK-0     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2937846..2948424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE573_RS19930 - 2938347..2938862 (-) 516 WP_370529535.1 methyl-accepting chemotaxis protein -
  GE573_RS19935 - 2939154..2939528 (-) 375 Protein_2932 protoglobin domain-containing protein -
  GE573_RS15090 (GE573_03013) - 2939761..2941284 (-) 1524 WP_190664182.1 FAD-dependent oxidoreductase -
  GE573_RS15095 (GE573_03014) - 2941409..2942266 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  GE573_RS15100 (GE573_03015) - 2942297..2942530 (-) 234 WP_025284522.1 IDEAL domain-containing protein -
  GE573_RS15105 (GE573_03016) comK 2942846..2943424 (+) 579 WP_003155179.1 competence protein ComK Regulator
  GE573_RS15110 (GE573_03017) - 2943570..2943938 (+) 369 WP_012117235.1 iron chaperone -
  GE573_RS15115 (GE573_03018) - 2943965..2944336 (+) 372 WP_015239528.1 iron chaperone -
  GE573_RS15120 (GE573_03019) - 2944459..2944968 (+) 510 WP_012117237.1 MepB family protein -
  GE573_RS15125 (GE573_03020) - 2945197..2945907 (-) 711 WP_032866163.1 YrpD family protein -
  GE573_RS15130 (GE573_03021) - 2946103..2946372 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  GE573_RS15135 (GE573_03022) - 2946405..2946722 (-) 318 WP_003155166.1 YbjQ family protein -
  GE573_RS15140 (GE573_03023) - 2946764..2948233 (-) 1470 WP_190664183.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=410695 GE573_RS15105 WP_003155179.1 2942846..2943424(+) (comK) [Bacillus velezensis strain AK-0]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=410695 GE573_RS15105 WP_003155179.1 2942846..2943424(+) (comK) [Bacillus velezensis strain AK-0]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment