Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   GE573_RS11600 Genome accession   NZ_CP047119
Coordinates   2242526..2242963 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain AK-0     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2237526..2247963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE573_RS11575 (GE573_02304) - 2238545..2239681 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  GE573_RS11580 (GE573_02305) - 2239696..2240130 (+) 435 WP_190664048.1 RDD family protein -
  GE573_RS11585 (GE573_02306) - 2240248..2240526 (+) 279 WP_263612330.1 YckD family protein -
  GE573_RS11590 (GE573_02307) - 2240630..2242066 (+) 1437 WP_076425807.1 glycoside hydrolase family 1 protein -
  GE573_RS11595 (GE573_02308) nin/comJ 2242107..2242505 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  GE573_RS11600 (GE573_02309) nucA/comI 2242526..2242963 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  GE573_RS11605 (GE573_02310) hxlB 2243322..2243879 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  GE573_RS11610 (GE573_02311) hxlA 2243876..2244511 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  GE573_RS11615 (GE573_02312) - 2244743..2245105 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=410685 GE573_RS11600 WP_003156588.1 2242526..2242963(-) (nucA/comI) [Bacillus velezensis strain AK-0]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=410685 GE573_RS11600 WP_003156588.1 2242526..2242963(-) (nucA/comI) [Bacillus velezensis strain AK-0]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment