Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   SGPB_RS02480 Genome accession   NC_015600
Coordinates   461342..462427 (+) Length   361 a.a.
NCBI ID   WP_013851553.1    Uniprot ID   F5X570
Organism   Streptococcus pasteurianus ATCC 43144     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 456342..467427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS02455 (SGPB_0435) asnA 457339..458331 (+) 993 WP_003063615.1 aspartate--ammonia ligase -
  SGPB_RS02460 (SGPB_0436) - 458465..459184 (-) 720 WP_013851549.1 hypothetical protein -
  SGPB_RS02465 (SGPB_0437) - 459358..460161 (-) 804 WP_013851550.1 hypothetical protein -
  SGPB_RS02470 (SGPB_0438) rsmD 460295..460834 (+) 540 WP_013851551.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SGPB_RS02475 (SGPB_0439) coaD 460867..461364 (+) 498 WP_013851552.1 pantetheine-phosphate adenylyltransferase -
  SGPB_RS02480 (SGPB_0440) sepM 461342..462427 (+) 1086 WP_013851553.1 SepM family pheromone-processing serine protease Regulator
  SGPB_RS02485 - 462556..462810 (+) 255 WP_003063626.1 DUF3923 family protein -
  SGPB_RS02490 (SGPB_0441) - 463113..464438 (+) 1326 WP_013851554.1 bifunctional metallophosphatase/5'-nucleotidase -
  SGPB_RS02495 (SGPB_0442) - 464470..465048 (+) 579 WP_013851555.1 YutD family protein -
  SGPB_RS02500 (SGPB_0443) rlmN 465070..466176 (+) 1107 WP_013851556.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SGPB_RS02505 (SGPB_0444) - 466176..466697 (+) 522 WP_003063633.1 VanZ family protein -

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 39089.80 Da        Isoelectric Point: 4.0869

>NTDB_id=41068 SGPB_RS02480 WP_013851553.1 461342..462427(+) (sepM) [Streptococcus pasteurianus ATCC 43144]
MAILKRFKEILKKLGRILYRFKWWILGVVGIVFLLFSLLYPLDYYIEMPGGAYDIRSVLTVDNKEDDEDGSYNFVAVTVS
QATLAQLVYAWLTPYTEISTVADVTGGYSNADYLRINEYYMETSQNTATYQALTLAGKEATLDYQGVYVLNVSDNSTFKG
ILNISDTVTGVNGQTFNSSAELMAYVADLDLGSEVTVQYTSDGEAKEATGKIIELSNGKNGIGIGLVDHTSVSSDVDVNF
DTSGVGGPSAGLMFTLDIYDQLNSEDLRKGRKIAGTGTIESDGSVGDIGGAALKVVAAAKAGADIFFVPNNPVDEETLKK
DPDAKTNYEEAVAAAKDLDTDMKIVPVTTVQEAIDYLRNND

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=41068 SGPB_RS02480 WP_013851553.1 461342..462427(+) (sepM) [Streptococcus pasteurianus ATCC 43144]
ATGGCAATCTTAAAAAGATTTAAAGAGATTTTGAAAAAGTTGGGTCGTATTTTATATCGCTTTAAGTGGTGGATATTAGG
TGTTGTAGGCATTGTTTTCTTACTATTTAGCTTGTTGTATCCGCTTGATTACTATATTGAAATGCCTGGTGGTGCTTATG
ATATTCGTAGCGTTTTAACGGTTGATAATAAGGAAGATGACGAAGATGGCTCTTATAATTTTGTGGCTGTCACGGTTAGT
CAGGCGACCTTGGCACAATTGGTTTATGCTTGGTTAACTCCCTACACAGAAATTTCGACAGTCGCAGATGTGACTGGTGG
TTATAGTAATGCTGATTATCTTCGTATCAATGAGTATTACATGGAAACCTCTCAGAATACAGCGACTTATCAAGCCTTAA
CATTGGCAGGAAAGGAAGCAACGCTTGATTATCAAGGGGTTTATGTTTTAAATGTTAGTGATAATTCGACGTTTAAAGGG
ATTTTGAATATCTCTGATACGGTAACTGGGGTTAACGGTCAGACATTTAACAGCTCGGCAGAATTAATGGCCTATGTGGC
TGATTTGGATTTAGGGTCTGAAGTAACTGTTCAATATACATCAGACGGCGAAGCAAAAGAAGCCACAGGAAAAATTATTG
AATTGTCAAATGGAAAAAATGGTATCGGAATCGGTTTGGTAGATCATACGTCGGTGTCATCAGATGTTGATGTTAATTTT
GATACGAGTGGTGTTGGTGGTCCAAGTGCTGGTTTGATGTTTACGCTTGATATTTATGACCAATTAAACAGTGAAGATTT
GCGTAAAGGTCGTAAAATTGCTGGTACAGGTACGATTGAATCAGATGGTTCAGTCGGGGATATTGGTGGCGCAGCACTTA
AAGTTGTTGCTGCTGCTAAAGCTGGTGCAGATATTTTCTTTGTTCCAAATAACCCTGTGGATGAGGAAACATTGAAAAAA
GACCCAGATGCGAAAACGAACTATGAAGAAGCTGTCGCAGCTGCTAAAGACCTCGATACCGATATGAAAATCGTTCCAGT
CACAACTGTTCAAGAAGCAATTGACTATCTGCGAAATAATGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB F5X570

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

67.449

94.46

0.637


Multiple sequence alignment