Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   GE573_RS09825 Genome accession   NZ_CP047119
Coordinates   1911357..1912469 (+) Length   370 a.a.
NCBI ID   WP_007409910.1    Uniprot ID   -
Organism   Bacillus velezensis strain AK-0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1906357..1917469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE573_RS09800 (GE573_01956) rnpA 1907069..1907419 (-) 351 WP_004392944.1 ribonuclease P protein component -
  GE573_RS09805 rpmH 1907573..1907707 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  GE573_RS09810 (GE573_01957) dnaA 1908330..1909670 (+) 1341 WP_007409908.1 chromosomal replication initiator protein DnaA -
  GE573_RS09815 (GE573_01958) dnaN 1909855..1910991 (+) 1137 WP_014416704.1 DNA polymerase III subunit beta -
  GE573_RS09820 (GE573_01959) rlbA 1911126..1911341 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  GE573_RS09825 (GE573_01960) recF 1911357..1912469 (+) 1113 WP_007409910.1 DNA replication/repair protein RecF Machinery gene
  GE573_RS09830 (GE573_01961) remB 1912487..1912732 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  GE573_RS09835 (GE573_01962) gyrB 1912789..1914705 (+) 1917 WP_011996153.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  GE573_RS09840 (GE573_01963) gyrA 1914921..1917380 (+) 2460 WP_023356657.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42430.36 Da        Isoelectric Point: 7.0882

>NTDB_id=410678 GE573_RS09825 WP_007409910.1 1911357..1912469(+) (recF) [Bacillus velezensis strain AK-0]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=410678 GE573_RS09825 WP_007409910.1 1911357..1912469(+) (recF) [Bacillus velezensis strain AK-0]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGAAACGGGGAT
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCCCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTATATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943

Multiple sequence alignment