Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   GE573_RS03205 Genome accession   NZ_CP047119
Coordinates   604939..605691 (-) Length   250 a.a.
NCBI ID   WP_190664463.1    Uniprot ID   -
Organism   Bacillus velezensis strain AK-0     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 599939..610691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE573_RS03180 (GE573_00628) mreC 600378..601241 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  GE573_RS03185 (GE573_00629) mreB 601272..602285 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  GE573_RS03190 (GE573_00630) radC 602377..603072 (-) 696 WP_007408165.1 DNA repair protein RadC -
  GE573_RS03195 (GE573_00631) - 603104..603673 (-) 570 WP_007408164.1 nucleoside triphosphate pyrophosphatase -
  GE573_RS03200 (GE573_00632) - 603814..604812 (-) 999 WP_190664462.1 SPOR domain-containing protein -
  GE573_RS03205 (GE573_00633) comC 604939..605691 (-) 753 WP_190664463.1 A24 family peptidase Machinery gene
  GE573_RS03210 (GE573_00634) - 605831..607123 (-) 1293 WP_190664464.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  GE573_RS03215 (GE573_00635) - 607182..609824 (-) 2643 WP_190664465.1 valine--tRNA ligase -
  GE573_RS03220 (GE573_00636) - 610277..610468 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27203.94 Da        Isoelectric Point: 9.4611

>NTDB_id=410656 GE573_RS03205 WP_190664463.1 604939..605691(-) (comC) [Bacillus velezensis strain AK-0]
MLLILFFLGLIFGSFFFTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=410656 GE573_RS03205 WP_190664463.1 604939..605691(-) (comC) [Bacillus velezensis strain AK-0]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTTTACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment