Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GE573_RS00685 Genome accession   NZ_CP047119
Coordinates   104503..105111 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus velezensis strain AK-0     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 99503..110111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE573_RS00645 (GE573_00124) - 100556..101062 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  GE573_RS00650 (GE573_00125) - 101201..101614 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  GE573_RS00655 (GE573_00126) - 101644..102078 (-) 435 WP_063094942.1 YppG family protein -
  GE573_RS00660 (GE573_00127) - 102265..102447 (+) 183 WP_003153532.1 YppF family protein -
  GE573_RS00665 (GE573_00128) - 102486..102854 (-) 369 WP_063094940.1 YppE family protein -
  GE573_RS00670 (GE573_00129) - 102900..103145 (-) 246 WP_014418233.1 DUF5446 family protein -
  GE573_RS00675 (GE573_00130) sspM 103351..103455 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  GE573_RS00680 (GE573_00131) - 103499..104461 (-) 963 WP_014305287.1 DUF2515 domain-containing protein -
  GE573_RS00685 (GE573_00132) recU 104503..105111 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  GE573_RS00690 (GE573_00133) - 105150..107933 (+) 2784 WP_190664379.1 PBP1A family penicillin-binding protein -
  GE573_RS00695 (GE573_00134) - 108011..108502 (-) 492 WP_190664380.1 YpoC family protein -
  GE573_RS00700 (GE573_00135) nth 108499..109158 (-) 660 WP_063094937.1 endonuclease III -
  GE573_RS00705 (GE573_00136) dnaD 109177..109875 (-) 699 WP_138092522.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=410638 GE573_RS00685 WP_012117837.1 104503..105111(+) (recU) [Bacillus velezensis strain AK-0]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=410638 GE573_RS00685 WP_012117837.1 104503..105111(+) (recU) [Bacillus velezensis strain AK-0]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment