Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   H2786_RS03125 Genome accession   NZ_CP059542
Coordinates   645069..645584 (-) Length   171 a.a.
NCBI ID   WP_000477153.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain E-011922     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 640069..650584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2786_RS03100 (H2786_03100) - 640616..642259 (+) 1644 WP_000281764.1 nitrite/sulfite reductase -
  H2786_RS03105 (H2786_03105) - 642252..642737 (+) 486 WP_000935247.1 DUF934 domain-containing protein -
  H2786_RS03110 (H2786_03110) - 642819..643172 (+) 354 WP_000457783.1 DMT family transporter -
  H2786_RS03115 (H2786_03115) - 643215..643658 (-) 444 WP_001176583.1 VOC family protein -
  H2786_RS03120 (H2786_03120) - 643785..644960 (-) 1176 WP_000129968.1 thiolase family protein -
  H2786_RS03125 (H2786_03125) fimT 645069..645584 (-) 516 WP_000477153.1 GspH/FimT family pseudopilin Machinery gene
  H2786_RS03130 (H2786_03130) omp38 645966..647036 (+) 1071 WP_002046685.1 outer membrane protein Omp38 -
  H2786_RS03135 (H2786_03135) - 647161..647304 (-) 144 WP_162138624.1 hypothetical protein -
  H2786_RS03140 (H2786_03140) - 647323..648528 (-) 1206 WP_098713722.1 RtcB family protein -
  H2786_RS03145 (H2786_03145) - 648805..650265 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19605.87 Da        Isoelectric Point: 9.1498

>NTDB_id=410620 H2786_RS03125 WP_000477153.1 645069..645584(-) (fimT) [Acinetobacter baumannii strain E-011922]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSNQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=410620 H2786_RS03125 WP_000477153.1 645069..645584(-) (fimT) [Acinetobacter baumannii strain E-011922]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTAATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421