Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SGPB_RS01825 Genome accession   NC_015600
Coordinates   336644..337369 (+) Length   241 a.a.
NCBI ID   WP_013851484.1    Uniprot ID   A0AAW6YMQ9
Organism   Streptococcus pasteurianus ATCC 43144     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 331644..342369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS01790 (SGPB_0311) - 332258..333232 (+) 975 WP_269446552.1 family 1 glycosylhydrolase -
  SGPB_RS10480 - 333600..334790 (+) 1191 Protein_314 IS110 family transposase -
  SGPB_RS01810 (SGPB_0315) - 335128..335511 (+) 384 WP_325052501.1 HAD hydrolase family protein -
  SGPB_RS01815 (SGPB_0316) - 335862..336164 (-) 303 WP_013851482.1 hypothetical protein -
  SGPB_RS01820 (SGPB_0317) - 336161..336580 (-) 420 WP_013851483.1 HIT family protein -
  SGPB_RS01825 (SGPB_0318) pptA 336644..337369 (+) 726 WP_013851484.1 ABC transporter ATP-binding protein Regulator
  SGPB_RS01830 (SGPB_0319) - 337371..338405 (+) 1035 WP_003063395.1 ABC transporter permease -
  SGPB_RS01835 (SGPB_0320) ccrZ 338470..339264 (+) 795 WP_012961430.1 cell cycle regulator CcrZ -
  SGPB_RS01840 (SGPB_0321) trmB 339264..339902 (+) 639 WP_003063401.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SGPB_RS11695 - 340428..340667 (+) 240 WP_230321736.1 hypothetical protein -
  SGPB_RS01850 (SGPB_0322) rimP 341158..341643 (+) 486 WP_172456429.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26764.09 Da        Isoelectric Point: 4.4838

>NTDB_id=41062 SGPB_RS01825 WP_013851484.1 336644..337369(+) (pptA) [Streptococcus pasteurianus ATCC 43144]
MLKIENITGGYINIPVLKNISFEVGDGELIGLIGLNGAGKSTTINEIIGLLTPYQGQISIDGLTLAQNQAEYRKKIGFIP
ETPSLYEELTLREHLETVAMAYDLNYDEAMARATELLELFRLSDKLEWFPINFSKGMKQKVMIICAFMVNPSLFIVDEPF
LGLDPLAISDLTELLAQEKAKGKAILMSTHVLDAAEKMCDRFVILHQGKIRATGTLAELREAFGDETATLNDIYMSLTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=41062 SGPB_RS01825 WP_013851484.1 336644..337369(+) (pptA) [Streptococcus pasteurianus ATCC 43144]
ATGTTAAAAATTGAAAATATAACTGGGGGATATATTAACATCCCTGTCTTAAAAAATATTTCTTTTGAAGTTGGTGATGG
TGAGCTTATTGGCTTGATTGGTTTGAATGGGGCTGGTAAGTCAACGACAATCAATGAAATTATTGGGCTCTTAACGCCAT
ATCAAGGGCAAATTTCGATTGATGGTTTGACTTTGGCGCAGAATCAGGCAGAATATCGTAAGAAAATTGGATTTATCCCA
GAAACGCCAAGTTTATATGAAGAATTGACTTTACGTGAACATTTAGAAACAGTTGCAATGGCTTATGACCTTAATTATGA
TGAGGCGATGGCGCGTGCGACAGAATTGTTGGAACTTTTCCGTTTATCTGATAAATTAGAGTGGTTTCCGATTAATTTCT
CTAAAGGGATGAAGCAGAAGGTCATGATTATTTGTGCCTTTATGGTTAATCCAAGTTTGTTTATCGTTGATGAGCCCTTT
TTGGGCTTGGACCCATTAGCAATTTCTGATTTGACAGAATTATTGGCGCAAGAAAAGGCAAAAGGAAAAGCGATTTTGAT
GTCAACACACGTTTTGGATGCTGCTGAAAAGATGTGTGACCGTTTTGTGATTTTGCATCAAGGGAAAATTCGTGCAACTG
GTACATTAGCAGAGCTACGTGAAGCATTTGGTGATGAGACAGCAACGCTTAATGATATTTATATGTCATTGACTAAAGAG
GTGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

79.079

99.17

0.784
  pptA Streptococcus thermophilus LMD-9

78.661

99.17

0.78

Multiple sequence alignment