Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   H1D55_RS08930 Genome accession   NZ_CP059474
Coordinates   1934845..1935360 (+) Length   171 a.a.
NCBI ID   WP_000477156.1    Uniprot ID   A0ABX6CJ21
Organism   Acinetobacter baumannii strain M175-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1929845..1940360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D55_RS08910 - 1930165..1931625 (+) 1461 WP_000004971.1 amino acid permease -
  H1D55_RS08915 - 1931902..1933107 (+) 1206 WP_042051260.1 RtcB family protein -
  H1D55_RS08920 - 1933111..1933269 (+) 159 WP_000692859.1 hypothetical protein -
  H1D55_RS08925 omp38 1933393..1934463 (-) 1071 WP_000777878.1 outer membrane protein Omp38 -
  H1D55_RS08930 fimT 1934845..1935360 (+) 516 WP_000477156.1 GspH/FimT family pseudopilin Machinery gene
  H1D55_RS08935 - 1935469..1936644 (+) 1176 WP_000129971.1 thiolase family protein -
  H1D55_RS08940 - 1936771..1937214 (+) 444 WP_001176580.1 VOC family protein -
  H1D55_RS08945 - 1937257..1937610 (-) 354 WP_000457783.1 DMT family transporter -
  H1D55_RS08950 - 1937692..1938177 (-) 486 WP_000935253.1 DUF934 domain-containing protein -
  H1D55_RS08955 - 1938170..1939813 (-) 1644 WP_000281766.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19594.80 Da        Isoelectric Point: 8.8196

>NTDB_id=410552 H1D55_RS08930 WP_000477156.1 1934845..1935360(+) (fimT) [Acinetobacter baumannii strain M175-3]
MFKSPGFTTVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=410552 H1D55_RS08930 WP_000477156.1 1934845..1935360(+) (fimT) [Acinetobacter baumannii strain M175-3]
ATGTTTAAATCTCCTGGTTTTACTACAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTACTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427