Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   H1D55_RS08790 Genome accession   NZ_CP059474
Coordinates   1905730..1906092 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain M175-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1900730..1911092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D55_RS08780 - 1903008..1905086 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  H1D55_RS08785 - 1905133..1905669 (-) 537 WP_000729758.1 chemotaxis protein CheW -
  H1D55_RS08790 pilH 1905730..1906092 (-) 363 WP_000101096.1 response regulator Machinery gene
  H1D55_RS08795 pilG 1906116..1906499 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  H1D55_RS08800 - 1906782..1907420 (+) 639 WP_002027721.1 hypothetical protein -
  H1D55_RS08805 - 1907480..1908598 (+) 1119 WP_042051249.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=410550 H1D55_RS08790 WP_000101096.1 1905730..1906092(-) (pilH) [Acinetobacter baumannii strain M175-3]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=410550 H1D55_RS08790 WP_000101096.1 1905730..1906092(-) (pilH) [Acinetobacter baumannii strain M175-3]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment