Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   FOC12_RS08415 Genome accession   NZ_CP047111
Coordinates   1633153..1633476 (+) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus anthracis strain FDAARGOS_704     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1628153..1638476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC12_RS08400 (FOC12_08410) - 1628669..1630036 (-) 1368 WP_000116806.1 aldehyde dehydrogenase -
  FOC12_RS08405 (FOC12_08415) inhA1 1630208..1632595 (-) 2388 WP_001035927.1 M6 family metalloprotease immune inhibitor InhA1 -
  FOC12_RS08410 (FOC12_08420) - 1632939..1633073 (+) 135 WP_000276214.1 anti-repressor SinI family protein -
  FOC12_RS08415 (FOC12_08425) sinR 1633153..1633476 (+) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  FOC12_RS08420 (FOC12_08430) calY 1633552..1634145 (-) 594 WP_000053732.1 biofilm matrix protein CalY -
  FOC12_RS08425 (FOC12_08435) - 1634543..1635307 (-) 765 WP_000917476.1 DUF4047 domain-containing protein -
  FOC12_RS08430 (FOC12_08440) - 1635469..1636056 (-) 588 WP_000172839.1 CalY family protein -
  FOC12_RS08435 (FOC12_08445) sipW 1636119..1636688 (-) 570 WP_000767813.1 signal peptidase I SipW -
  FOC12_RS08440 (FOC12_08450) - 1636883..1638169 (-) 1287 WP_000247037.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=410544 FOC12_RS08415 WP_000578878.1 1633153..1633476(+) (sinR) [Bacillus anthracis strain FDAARGOS_704]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=410544 FOC12_RS08415 WP_000578878.1 1633153..1633476(+) (sinR) [Bacillus anthracis strain FDAARGOS_704]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment