Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   H1D55_RS02430 Genome accession   NZ_CP059474
Coordinates   522744..523379 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain M175-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517744..528379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D55_RS02405 - 518584..519597 (+) 1014 WP_001096107.1 aminoglycoside phosphotransferase family protein -
  H1D55_RS02410 murU 519597..520286 (+) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  H1D55_RS02415 rsmG 520374..521006 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  H1D55_RS02420 - 521028..521810 (+) 783 WP_000057216.1 ParA family protein -
  H1D55_RS02425 - 521807..522694 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  H1D55_RS02430 exbB 522744..523379 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H1D55_RS02435 - 523395..523823 (+) 429 WP_000669683.1 ExbD/TolR family protein -
  H1D55_RS02440 msbA 523820..525547 (+) 1728 WP_001070730.1 lipid A export permease/ATP-binding protein MsbA -
  H1D55_RS02445 lpxK 525550..526560 (+) 1011 WP_000050456.1 tetraacyldisaccharide 4'-kinase -
  H1D55_RS02450 kdsB 526570..527331 (+) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H1D55_RS02455 - 527343..528323 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=410528 H1D55_RS02430 WP_000264037.1 522744..523379(+) (exbB) [Acinetobacter baumannii strain M175-3]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=410528 H1D55_RS02430 WP_000264037.1 522744..523379(+) (exbB) [Acinetobacter baumannii strain M175-3]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment