Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   H1R75_RS02650 Genome accession   NZ_CP059471
Coordinates   485012..485620 (-) Length   202 a.a.
NCBI ID   WP_024344642.1    Uniprot ID   -
Organism   Streptococcus equinus strain MDC1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 480012..490620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R75_RS02635 (H1R75_02635) nadE 480295..481119 (+) 825 WP_024344639.1 ammonia-dependent NAD(+) synthetase -
  H1R75_RS02640 (H1R75_02640) pepC 481372..482709 (+) 1338 WP_021141771.1 aminopeptidase C -
  H1R75_RS02645 (H1R75_02645) pbp1a 482800..485025 (-) 2226 WP_182001604.1 penicillin-binding protein PBP1A -
  H1R75_RS02650 (H1R75_02650) recU 485012..485620 (-) 609 WP_024344642.1 Holliday junction resolvase RecU Machinery gene
  H1R75_RS02655 (H1R75_02655) - 485695..486213 (+) 519 WP_182001605.1 DUF1273 domain-containing protein -
  H1R75_RS02660 (H1R75_02660) gpsB 486340..486669 (+) 330 WP_021141777.1 cell division regulator GpsB -
  H1R75_RS02670 (H1R75_02670) - 487274..488446 (+) 1173 WP_027968116.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  H1R75_RS02675 (H1R75_02675) - 488510..490033 (+) 1524 WP_182001606.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23275.81 Da        Isoelectric Point: 9.9390

>NTDB_id=410441 H1R75_RS02650 WP_024344642.1 485012..485620(-) (recU) [Streptococcus equinus strain MDC1]
MVNYPHHIIRKQAAPASKKVKKSTINFANRGMSFEAAINETNNYYLSRDIAVIHKKPTPIQIVKVDYPKRSRAKIVEAYF
RQASTTDYSGVYKGRYIDFEAKETRQKTSMPLKNFHAHQIEHMEHVLKQDGICFVLLHFSTIKETYYLPASALVDFYQIN
LGTKSMPLDYIRKNGYMVTTSSLPQVPYLDIIDQKILGGDHN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=410441 H1R75_RS02650 WP_024344642.1 485012..485620(-) (recU) [Streptococcus equinus strain MDC1]
ATGGTTAATTATCCACATCATATTATTCGAAAACAAGCAGCCCCAGCTTCTAAAAAGGTAAAAAAATCAACAATTAATTT
TGCTAACCGTGGGATGAGTTTTGAAGCAGCAATCAATGAAACTAATAATTACTACTTATCTCGAGATATTGCTGTTATTC
ACAAAAAACCAACCCCAATTCAAATTGTAAAAGTTGATTATCCTAAAAGAAGCCGTGCAAAAATTGTAGAAGCTTACTTT
CGTCAAGCATCAACAACCGATTATTCTGGCGTTTATAAAGGTCGCTATATTGACTTTGAAGCTAAAGAAACTCGGCAAAA
GACATCCATGCCACTTAAAAATTTTCATGCCCACCAGATTGAGCACATGGAACATGTCTTAAAGCAAGATGGGATTTGCT
TTGTATTACTTCATTTTTCAACAATTAAGGAAACTTATTACTTACCTGCTAGTGCTTTAGTGGACTTTTACCAAATCAAT
CTCGGCACCAAATCCATGCCACTTGATTATATCAGAAAAAATGGATATATGGTGACGACAAGTTCACTCCCTCAGGTTCC
TTATTTGGATATTATCGATCAAAAAATTTTAGGCGGTGATCACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.761

97.525

0.495