Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   H1Q68_RS11715 Genome accession   NZ_CP059448
Coordinates   2511375..2511992 (+) Length   205 a.a.
NCBI ID   WP_053255641.1    Uniprot ID   A0ABY1TG68
Organism   Pseudomonas fluorescens strain 2020WEIHUA_J     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2506375..2516992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1Q68_RS11695 (H1Q68_11695) - 2506965..2507891 (-) 927 WP_053255637.1 alpha/beta hydrolase -
  H1Q68_RS29400 - 2508018..2508183 (+) 166 Protein_2304 SDR family NAD(P)-dependent oxidoreductase -
  H1Q68_RS11700 (H1Q68_11700) - 2508270..2509421 (-) 1152 WP_053255639.1 sensor domain-containing diguanylate cyclase -
  H1Q68_RS11705 (H1Q68_11705) - 2509561..2510148 (+) 588 WP_053255640.1 NUDIX domain-containing protein -
  H1Q68_RS11710 (H1Q68_11710) - 2510155..2511318 (+) 1164 WP_096236849.1 alpha/beta fold hydrolase -
  H1Q68_RS11715 (H1Q68_11715) dinR/lexA 2511375..2511992 (+) 618 WP_053255641.1 transcriptional repressor LexA Regulator
  H1Q68_RS11720 (H1Q68_11720) imuA 2511992..2512606 (+) 615 WP_053255642.1 translesion DNA synthesis-associated protein ImuA -
  H1Q68_RS11725 (H1Q68_11725) - 2512614..2514029 (+) 1416 WP_053255643.1 Y-family DNA polymerase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22388.69 Da        Isoelectric Point: 6.8763

>NTDB_id=410360 H1Q68_RS11715 WP_053255641.1 2511375..2511992(+) (dinR/lexA) [Pseudomonas fluorescens strain 2020WEIHUA_J]
MYSMTTLTPRRTAILTFIRERIAQQGQPPSLAEIAEAFGFASRSVARKHVVALTEAGFIEVNPNQARGIRLLNQPARPEW
LDVPVLGRVAAGLPIGADAEVHSRLQLDPGTFAKTPDYLLRVQGDSMIEDGILDGDLVGVRRSAEALNGQIVVARLDGEV
TIKRFERHGEHVRLLPRNPAYQPIVVGPDQDLAIEGVFCGLVRQG

Nucleotide


Download         Length: 618 bp        

>NTDB_id=410360 H1Q68_RS11715 WP_053255641.1 2511375..2511992(+) (dinR/lexA) [Pseudomonas fluorescens strain 2020WEIHUA_J]
ATGTACTCCATGACGACTCTAACTCCCCGCCGCACTGCCATCCTGACCTTTATCCGCGAGCGTATCGCGCAACAAGGCCA
GCCCCCCAGCCTCGCCGAGATCGCCGAGGCGTTTGGCTTCGCCTCGCGCAGTGTGGCTCGCAAGCATGTGGTGGCGCTGA
CCGAAGCCGGCTTCATTGAGGTCAACCCCAATCAGGCGCGTGGTATCCGTCTGCTCAACCAACCGGCACGCCCCGAATGG
CTGGACGTCCCCGTCCTCGGCCGCGTCGCGGCAGGCTTGCCCATCGGCGCCGATGCTGAGGTGCACAGCCGTCTGCAACT
CGACCCTGGCACCTTCGCGAAAACCCCTGACTACCTGCTGCGCGTGCAGGGCGACTCAATGATCGAAGACGGCATTCTCG
ATGGCGACCTGGTGGGCGTACGCCGCAGCGCCGAGGCCTTGAACGGACAAATCGTCGTGGCGCGCCTGGACGGCGAAGTC
ACCATCAAACGCTTCGAGCGTCACGGCGAGCATGTACGCCTGCTGCCACGCAACCCCGCGTATCAACCCATCGTGGTAGG
CCCCGATCAGGACCTGGCCATTGAAGGGGTGTTCTGCGGCCTGGTGAGGCAAGGCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(84-198)

LexA DNA binding domain (LexA_DNA_bind)

(4-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

39.13

100

0.395

Multiple sequence alignment