Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SPHCH_RS00450 Genome accession   NC_015593
Coordinates   101285..102652 (+) Length   455 a.a.
NCBI ID   WP_013846066.1    Uniprot ID   F6ETY6
Organism   Sphingobium chlorophenolicum L-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 96285..107652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPHCH_RS00425 (Sphch_0086) - 96640..97065 (-) 426 WP_013846061.1 metallopeptidase family protein -
  SPHCH_RS00430 (Sphch_0087) - 97149..97436 (+) 288 WP_013846062.1 4a-hydroxytetrahydrobiopterin dehydratase -
  SPHCH_RS00435 (Sphch_0088) - 97428..98006 (-) 579 WP_013846063.1 hypothetical protein -
  SPHCH_RS00440 (Sphch_0089) - 98003..100339 (-) 2337 WP_013846064.1 patatin-like protein -
  SPHCH_RS00445 (Sphch_0090) - 100497..101195 (-) 699 WP_174269594.1 endonuclease/exonuclease/phosphatase family protein -
  SPHCH_RS00450 (Sphch_0091) radA 101285..102652 (+) 1368 WP_013846066.1 DNA repair protein RadA Machinery gene
  SPHCH_RS00455 (Sphch_0092) - 102663..103178 (+) 516 WP_013846067.1 CvpA family protein -
  SPHCH_RS00460 (Sphch_0093) - 103185..104189 (-) 1005 WP_013846068.1 NADPH:quinone oxidoreductase family protein -
  SPHCH_RS00465 (Sphch_0094) - 104190..105362 (-) 1173 WP_013846069.1 acetyl-CoA C-acyltransferase -
  SPHCH_RS00470 (Sphch_0095) - 105389..105841 (-) 453 WP_013846070.1 MaoC family dehydratase -
  SPHCH_RS00475 (Sphch_0096) - 105838..107577 (-) 1740 WP_013846071.1 acyl-CoA dehydrogenase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 47709.59 Da        Isoelectric Point: 6.7629

>NTDB_id=41036 SPHCH_RS00450 WP_013846066.1 101285..102652(+) (radA) [Sphingobium chlorophenolicum L-1]
MAKAKRKFVCQQCGTVSGRWQGQCDDCGEWNSIVEEAAETIFSARHDLHSGGRALTLVGLDDKVELPPRTSTGIAEFDRA
LGGGIVSGSATLIGGDPGIGKSTLLLQAAARIASAGHSVAYISGEEAADQVRLRAQRLGLGNAPVRLASATSVRDILTTL
GEGAPPALLIIDSIQTMHSDLIEGAPGTVSQVRASSQELIRFAKQRGTALILVGHVTKDGSIAGPRVLEHMVDTVLSFEG
ERSHQYRILRAIKNRFGGTDEIGVFAMVAEGLEEVANPSALFLTHRDENVTGATVFPALEGTRPVLVEIQALVVRLSSGA
TPRRAVVGWDSGRLAMVLAVLEARCGLSFSTCEVYLNVAGGYRLSDPAADLAVAAALMSALSERPVPADVVLFGEIALSG
EIRPVAHAPLRLREAAKLGFNRAFVPAAAADGVKGISVSGYRALAQLVDQMLGRG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=41036 SPHCH_RS00450 WP_013846066.1 101285..102652(+) (radA) [Sphingobium chlorophenolicum L-1]
ATGGCCAAAGCAAAGCGCAAATTCGTCTGTCAGCAATGCGGCACCGTTTCCGGCCGGTGGCAGGGGCAATGCGACGATTG
CGGCGAATGGAACAGCATTGTCGAGGAAGCGGCGGAGACGATCTTCTCCGCGCGCCATGATCTGCATAGCGGGGGGCGCG
CCCTGACGCTGGTGGGCCTGGACGACAAGGTCGAGCTGCCGCCACGCACCAGTACGGGCATCGCGGAATTCGACCGGGCG
CTGGGGGGTGGAATCGTCTCCGGATCGGCGACCCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGTTGCA
GGCGGCCGCCCGCATCGCTTCGGCCGGGCACAGCGTCGCCTATATCAGCGGGGAGGAGGCGGCGGATCAGGTCCGGCTGC
GCGCCCAGCGTCTGGGCCTGGGCAATGCGCCGGTGCGACTGGCCAGCGCCACTTCCGTGCGCGATATTTTGACGACGCTG
GGGGAGGGTGCGCCGCCTGCCCTGCTGATCATCGATTCGATCCAGACGATGCACAGCGACCTGATCGAGGGCGCGCCGGG
CACGGTCAGCCAGGTGCGCGCTTCGTCGCAGGAACTGATCCGCTTCGCCAAGCAGCGCGGCACGGCGCTGATCCTGGTCG
GCCATGTGACCAAGGACGGCAGCATCGCCGGTCCCCGGGTGCTGGAGCATATGGTCGACACGGTGCTGAGCTTCGAGGGC
GAGCGCAGCCACCAATATCGCATCCTGCGCGCCATCAAGAACCGTTTCGGCGGCACGGACGAGATCGGCGTCTTCGCCAT
GGTGGCGGAGGGGCTGGAGGAGGTCGCCAACCCGTCCGCGTTGTTCCTCACCCATCGTGACGAGAATGTGACGGGCGCGA
CCGTTTTCCCCGCGCTGGAGGGTACGCGCCCGGTGCTGGTCGAAATTCAGGCGTTGGTGGTGCGGCTTTCCAGCGGCGCG
ACCCCGCGCCGCGCCGTGGTGGGGTGGGACAGTGGAAGGCTGGCCATGGTGCTGGCCGTGCTGGAGGCGCGATGCGGCCT
CAGCTTCTCGACCTGCGAAGTCTATCTGAACGTCGCGGGCGGTTATCGCCTGTCGGACCCCGCCGCCGACCTTGCCGTCG
CCGCCGCGCTGATGTCCGCTCTCTCCGAACGCCCGGTGCCCGCCGATGTCGTCCTGTTCGGCGAAATCGCGTTGTCGGGG
GAAATCCGCCCCGTGGCGCATGCCCCGCTGCGGTTGCGGGAAGCGGCCAAGCTGGGCTTCAACCGCGCCTTCGTCCCCGC
CGCCGCGGCGGATGGGGTGAAGGGCATTTCGGTCAGCGGCTATCGCGCGCTCGCGCAACTTGTTGACCAGATGCTTGGGC
GCGGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(82-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6ETY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.052

100

0.488
  radA Streptococcus mitis NCTC 12261

46.389

100

0.466
  radA Streptococcus pneumoniae Rx1

46.171

100

0.464
  radA Streptococcus pneumoniae D39

46.171

100

0.464
  radA Streptococcus pneumoniae R6

46.171

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.171

100

0.464
  radA Streptococcus mitis SK321

47.586

95.604

0.455

Multiple sequence alignment