Detailed information NTG0410347

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H1Q68_RS06835
• Genome accession: NZ_CP059448
• Coordinates: 1526203..1527210 (+)
• Length: 335 a.a.
• NCBI ID: WP_053254759.1
• Uniprot ID: A0ABY1TE31
• Organism: Pseudomonas fluorescens strain 2020WEIHUA_J
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1521203..1532210

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1Q68_RS06805 (H1Q68_06810)	fghA	1521207..1522052 (+)	846	WP_053254754.1	S-formylglutathione hydrolase	-
H1Q68_RS06810 (H1Q68_06815)	ispF	1522107..1522580 (+)	474	WP_053254755.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H1Q68_RS06815 (H1Q68_06820)	truD	1522577..1523635 (+)	1059	WP_053254756.1	tRNA pseudouridine(13) synthase TruD	-
H1Q68_RS06820 (H1Q68_06825)	surE	1523623..1524372 (+)	750	WP_053254757.1	5'/3'-nucleotidase SurE	-
H1Q68_RS06825 (H1Q68_06830)	-	1524414..1525049 (+)	636	WP_169850588.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
H1Q68_RS06830 (H1Q68_06835)	-	1525260..1526096 (+)	837	WP_069552040.1	peptidoglycan DD-metalloendopeptidase family protein	-
H1Q68_RS06835 (H1Q68_06840)	rpoS	1526203..1527210 (+)	1008	WP_053254759.1	RNA polymerase sigma factor RpoS	Regulator
H1Q68_RS06840 (H1Q68_06845)	-	1527445..1527654 (-)	210	WP_002554837.1	cold-shock protein	-
H1Q68_RS06845 (H1Q68_06850)	dcd	1528044..1528610 (+)	567	WP_017137166.1	dCTP deaminase	-
H1Q68_RS06850 (H1Q68_06855)	-	1528718..1528918 (+)	201	WP_027604457.1	hypothetical protein	-
H1Q68_RS06855 (H1Q68_06860)	pdeM	1528949..1529584 (-)	636	WP_053255348.1	ligase-associated DNA damage response endonuclease PdeM	-
H1Q68_RS06860 (H1Q68_06865)	-	1529599..1532079 (-)	2481	WP_053255349.1	ligase-associated DNA damage response DEXH box helicase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38295.39 Da
• Isoelectric Point: 4.8988

>NTDB_id=410347 H1Q68_RS06835 WP_053254759.1 1526203..1527210(+) (rpoS) [Pseudomonas fluorescens strain 2020WEIHUA_J]
MALSKEAPEFDIDDEDLAIEILTDKESMSNDEGSATPSVRTKSKNSTALKQHKYIDYTRALDATQLYLNEIGFSPLLTPE
EEVHFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI
ERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTL
LDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLR
EILEKNGLSSESLFQ

Nucleotide

• Length: 1008 bp

>NTDB_id=410347 H1Q68_RS06835 WP_053254759.1 1526203..1527210(+) (rpoS) [Pseudomonas fluorescens strain 2020WEIHUA_J]
ATGGCTCTCAGTAAAGAAGCGCCGGAGTTTGACATCGACGATGAGGATCTCGCTATTGAGATACTCACCGATAAGGAATC
GATGTCGAATGATGAAGGGTCTGCTACACCTTCAGTTCGCACCAAATCCAAGAACTCCACCGCGTTAAAGCAACACAAGT
ACATTGACTACACGCGGGCGCTCGACGCAACGCAGCTGTACCTCAATGAGATCGGCTTTTCCCCTCTGCTGACGCCCGAA
GAAGAAGTCCATTTTGCGCGCTTGTCGCAAAAGGGCGATCCGGCCGGGCGTAAGCGCATGATTGAAAGTAACCTGCGGCT
GGTGGTTAAAATCGCCCGGCGTTATGTCAATCGTGGTCTGTCCCTGTTGGACCTGATCGAAGAGGGCAACCTGGGCTTGA
TCCGGGCGGTGGAGAAGTTCGACCCTGAGCGGGGCTTCCGCTTTTCAACCTATGCCACCTGGTGGATCCGCCAGACCATC
GAACGGGCGATCATGAATCAGACCCGCACGATCCGGTTGCCGATCCATGTGGTCAAAGAGCTCAACGTCTACCTGCGGGC
AGCGCGAGAGCTCACACAAAAACTCGATCATGAACCTTCGCCTGAAGAGATCGCCAACCTGCTGGAAAAACCGGTAGGGG
AGGTCAAGCGCATGCTTGGCTTGAATGAGCGCGTGTCTTCGGTCGATGTCTCGCTGGGTCCGGATTCGGATAAAACCCTG
CTGGACACCCTTACGGATGATCGCCCGACGGATCCTTGCGAGCTGTTGCAGGACGATGATCTTTCCCAAAGCATTGACCA
GTGGCTGTCTGAGCTCACGGATAAGCAGCGTGAAGTGGTGATTCGCCGCTTCGGCCTGCGTGGCCATGAGAGCAGCACCC
TGGAGGATGTAGGCCTGGAAATTGGCCTGACCCGTGAGCGGGTGCGGCAGATCCAGGTAGAGGGCCTCAAGCGCTTGCGT
GAGATCCTCGAGAAGAATGGCTTGTCGAGTGAGTCGTTGTTCCAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (62-95)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70, region 4 (Sigma70_r4) (268-321)

• Sigma-70 region 3 (Sigma70_r3) (180-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	97.91	0.651