Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D5E69_RS03130 Genome accession   NZ_CP047095
Coordinates   611251..612201 (+) Length   316 a.a.
NCBI ID   WP_159130313.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain 151-25     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 606251..617201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5E69_RS03105 (D5E69_03105) motA 606406..607197 (+) 792 WP_048006816.1 flagellar motor stator protein MotA -
  D5E69_RS03110 (D5E69_03110) motB 607184..607975 (+) 792 WP_048012240.1 flagellar motor protein MotB -
  D5E69_RS03115 (D5E69_03115) - 608139..608678 (+) 540 WP_148797134.1 nucleoside deaminase -
  D5E69_RS03120 (D5E69_03120) - 608733..608909 (+) 177 WP_159129160.1 hypothetical protein -
  D5E69_RS03125 (D5E69_03125) - 609040..610431 (+) 1392 WP_048006818.1 sodium:alanine symporter family protein -
  D5E69_RS03130 (D5E69_03130) ceuB 611251..612201 (+) 951 WP_159130313.1 ABC transporter permease Machinery gene
  D5E69_RS03135 (D5E69_03135) - 612194..613144 (+) 951 WP_048006819.1 iron chelate uptake ABC transporter family permease subunit -
  D5E69_RS03140 (D5E69_03140) - 613141..613902 (+) 762 WP_048006820.1 ATP-binding cassette domain-containing protein -
  D5E69_RS03145 (D5E69_03145) - 613932..614867 (+) 936 WP_048012243.1 siderophore ABC transporter substrate-binding protein -
  D5E69_RS03150 (D5E69_03150) - 615307..616401 (+) 1095 WP_053071998.1 carbohydrate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34585.87 Da        Isoelectric Point: 10.0422

>NTDB_id=410256 D5E69_RS03130 WP_159130313.1 611251..612201(+) (ceuB) [Rossellomorea marisflavi strain 151-25]
MKKRYLLILLILLSALSLFVGVSSISPADLLSGRTDEVEVFLVSRLPRLVAILLAGAGMSIAGLIMQSLSRTKFVSPTTA
GTMDATRLGILVSMIIFVEASTMEKLLVAFAFAMAGTFLFMQILDRIKFKDAVFIPLVGLMLGNVLSSVTTFFAYKANLI
QNMSSWLQGDFSLIMKGRYELLYISVPVILLAYLFANRFTVAGMGEEFSKNLGMSYRSIVNIGLILTSLVTVVVILTVGM
IPFLGLIVPNIVSLFKGDHLQKTLPHTAILGAIFLLVCDILGRVIIFPYEISISLMVGVIGSGIFLYMLLRRKGYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=410256 D5E69_RS03130 WP_159130313.1 611251..612201(+) (ceuB) [Rossellomorea marisflavi strain 151-25]
CTGAAAAAAAGATATTTACTGATTTTACTGATCCTCCTCTCAGCCCTTTCTTTATTTGTCGGAGTGAGCAGCATCTCGCC
GGCAGATTTACTCAGCGGAAGGACCGATGAGGTGGAAGTGTTCCTGGTCAGCAGGCTGCCGAGGCTTGTGGCGATCCTAC
TGGCGGGAGCGGGGATGAGCATTGCCGGTCTCATCATGCAGAGCCTGAGCCGGACTAAGTTTGTATCTCCGACCACGGCG
GGGACAATGGATGCGACAAGGCTCGGGATCCTTGTATCGATGATCATTTTCGTCGAGGCATCCACGATGGAGAAGCTTCT
TGTGGCGTTTGCCTTTGCCATGGCGGGCACATTCCTGTTCATGCAGATCCTTGACCGGATCAAGTTCAAGGATGCTGTCT
TCATTCCCTTGGTGGGGCTGATGCTTGGGAATGTCCTGTCGTCGGTCACGACTTTTTTCGCCTACAAGGCGAACCTCATC
CAGAATATGTCTTCATGGCTGCAAGGAGATTTCTCCCTCATTATGAAGGGAAGATACGAGCTTCTATACATAAGTGTACC
GGTCATATTACTTGCCTACCTCTTCGCCAATCGCTTTACGGTTGCGGGAATGGGAGAGGAGTTTTCGAAGAATCTGGGGA
TGTCCTACAGGAGCATCGTGAACATCGGGTTGATCCTTACATCACTCGTTACGGTGGTCGTGATTCTGACGGTGGGGATG
ATTCCATTCCTCGGGCTCATCGTCCCGAATATCGTCTCCCTGTTCAAGGGGGATCACCTCCAGAAAACGCTGCCTCATAC
GGCCATCCTGGGAGCGATTTTTCTTCTCGTCTGCGATATCCTCGGAAGGGTCATTATTTTCCCGTATGAAATCTCCATCA
GTCTGATGGTAGGGGTCATTGGAAGTGGGATCTTCCTCTACATGCTTTTAAGGAGGAAGGGATATGAGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.438

99.051

0.509

Multiple sequence alignment