Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D5E69_RS00595 Genome accession   NZ_CP047095
Coordinates   112168..113538 (+) Length   456 a.a.
NCBI ID   WP_048007584.1    Uniprot ID   A0A0J5UWF3
Organism   Rossellomorea marisflavi strain 151-25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 107168..118538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5E69_RS00575 (D5E69_00575) - 107496..107957 (+) 462 WP_048007580.1 CtsR family transcriptional regulator -
  D5E69_RS00580 (D5E69_00580) - 107978..108520 (+) 543 WP_048007581.1 UvrB/UvrC motif-containing protein -
  D5E69_RS00585 (D5E69_00585) - 108517..109602 (+) 1086 WP_048007582.1 protein arginine kinase -
  D5E69_RS00590 (D5E69_00590) clpC 109599..112043 (+) 2445 WP_048007583.1 ATP-dependent protease ATP-binding subunit ClpC -
  D5E69_RS00595 (D5E69_00595) radA 112168..113538 (+) 1371 WP_048007584.1 DNA repair protein RadA Machinery gene
  D5E69_RS00600 (D5E69_00600) disA 113543..114616 (+) 1074 WP_048007585.1 DNA integrity scanning diadenylate cyclase DisA -
  D5E69_RS00605 (D5E69_00605) - 114803..115891 (+) 1089 WP_048007586.1 PIN/TRAM domain-containing protein -
  D5E69_RS00610 (D5E69_00610) ispD 115959..116657 (+) 699 WP_048013965.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  D5E69_RS00615 (D5E69_00615) ispF 116650..117126 (+) 477 WP_048007588.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49540.84 Da        Isoelectric Point: 6.7651

>NTDB_id=410254 D5E69_RS00595 WP_048007584.1 112168..113538(+) (radA) [Rossellomorea marisflavi strain 151-25]
MAKKKTKFVCSSCGYESAKWMGKCPGCNEWNTMVEEVAITGKQPRGAFQHSEGPSKAEKLTSIETMQEPRVLTDSKELNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSSQLAEQKQKVLYISGEESIKQTKLRADRLNITADDLYIYAETNLQSIHQT
IDQLSPDFVIIDSIQTIYHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLYFEG
ERHHSYRILRAVKNRFGSTNEMGIFEMKELGLEEVANPSEIFLEERSQGSAGSTVVASMEGTRPVLVEIQALVTPTSFNN
PRRMATGIDHSRVSLIMAVLEKRAGMLLQQQDAYLKVAGGVKLDEPAIDLAVAASIASSFRDKASRAQDCIIGEVGLTGE
IRRVSRIEQRVQEAAKLGFQRVIIPQNNIGGWQAPGGIEVVGVSDIHQALGMILGG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=410254 D5E69_RS00595 WP_048007584.1 112168..113538(+) (radA) [Rossellomorea marisflavi strain 151-25]
TTGGCAAAAAAGAAGACAAAATTCGTATGTTCATCCTGCGGGTATGAATCAGCAAAATGGATGGGGAAATGTCCCGGATG
TAATGAGTGGAACACGATGGTGGAAGAAGTGGCGATTACGGGTAAGCAGCCCCGAGGTGCATTCCAACACAGCGAAGGGC
CATCAAAGGCTGAAAAACTGACATCCATCGAGACGATGCAAGAGCCCCGTGTCCTTACTGATTCCAAAGAGCTCAACCGT
GTACTTGGAGGCGGAGTGGTGCCGGGATCACTTGTGTTGATAGGGGGAGACCCGGGAATAGGGAAATCCACCCTGCTGTT
GCAAGTATCTTCACAGCTTGCCGAACAAAAGCAAAAAGTACTTTATATCTCAGGTGAAGAGTCCATCAAGCAGACCAAAC
TGCGTGCGGACCGGCTGAATATCACGGCTGATGACCTATACATATATGCAGAAACCAACCTGCAGTCGATCCACCAGACC
ATCGATCAGCTTTCACCCGACTTTGTCATCATCGACTCCATTCAGACCATCTATCATCCGGAGGTCACTTCGGCGCCGGG
GAGCGTATCGCAGGTGCGGGAATGTACGGCGGAATTGATGCGGATCGGTAAGACGAAAGGGATTGCCATTTTCATCGTCG
GACATGTGACCAAGGAAGGATCCATTGCCGGTCCACGCCTGCTGGAGCATATGGTCGACACCGTGCTTTATTTCGAAGGG
GAGCGCCACCATTCCTACAGAATCTTGAGGGCGGTGAAAAACCGTTTCGGTTCTACGAATGAGATGGGGATCTTCGAAAT
GAAGGAGCTGGGTCTTGAAGAAGTCGCAAATCCTTCGGAGATCTTCCTCGAAGAACGTTCACAGGGATCGGCCGGTTCGA
CGGTCGTTGCATCCATGGAAGGAACAAGGCCGGTGCTTGTGGAAATCCAAGCCCTCGTCACACCGACGAGCTTCAATAAC
CCGAGACGTATGGCAACTGGAATCGACCATAGCAGGGTCTCCCTGATCATGGCTGTTCTTGAGAAGCGGGCGGGGATGCT
CCTTCAGCAACAGGATGCCTACCTTAAGGTCGCAGGTGGAGTGAAGCTGGATGAGCCGGCTATCGATTTGGCCGTAGCGG
CGAGCATTGCTTCAAGCTTCAGGGACAAAGCCTCACGCGCACAGGATTGCATCATCGGGGAAGTGGGGCTGACCGGGGAG
ATCCGGCGCGTCTCACGAATCGAGCAGAGGGTGCAGGAAGCGGCGAAGCTTGGCTTCCAGCGCGTCATCATCCCTCAGAA
CAATATCGGGGGTTGGCAGGCACCGGGCGGAATCGAAGTGGTCGGTGTATCCGATATCCATCAAGCGTTGGGTATGATTT
TAGGAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(76-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J5UWF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.261

100

0.739
  radA Streptococcus pneumoniae Rx1

61.72

100

0.629
  radA Streptococcus pneumoniae D39

61.72

100

0.629
  radA Streptococcus pneumoniae R6

61.72

100

0.629
  radA Streptococcus pneumoniae TIGR4

61.72

100

0.629
  radA Streptococcus mitis SK321

61.72

100

0.629
  radA Streptococcus mitis NCTC 12261

61.72

100

0.629

Multiple sequence alignment