Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GQZ26_RS06165 Genome accession   NZ_CP047085
Coordinates   1206147..1206434 (+) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus paranthracis strain BC307     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1201147..1211434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQZ26_RS06150 (GQZ26_06145) - 1202554..1202949 (+) 396 WP_010480749.1 DUF6262 family protein -
  GQZ26_RS06155 (GQZ26_06150) nadE 1203060..1203878 (-) 819 WP_000174881.1 ammonia-dependent NAD(+) synthetase -
  GQZ26_RS06160 (GQZ26_06155) - 1204150..1206030 (+) 1881 WP_001026020.1 FtsX-like permease family protein -
  GQZ26_RS06165 (GQZ26_06160) abrB 1206147..1206434 (+) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GQZ26_RS06170 (GQZ26_06165) - 1206709..1207659 (+) 951 WP_001089039.1 serine protease -
  GQZ26_RS06175 (GQZ26_06170) - 1207872..1208975 (-) 1104 WP_000829433.1 ABC transporter ATP-binding protein -
  GQZ26_RS06180 (GQZ26_06175) - 1209242..1210104 (-) 863 Protein_1239 PucR family transcriptional regulator -
  GQZ26_RS06185 (GQZ26_06180) - 1210173..1211033 (-) 861 WP_000064378.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=410217 GQZ26_RS06165 WP_000648330.1 1206147..1206434(+) (abrB) [Bacillus paranthracis strain BC307]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=410217 GQZ26_RS06165 WP_000648330.1 1206147..1206434(+) (abrB) [Bacillus paranthracis strain BC307]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment