Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GRB21_RS26905 Genome accession   NZ_CP047073
Coordinates   5736239..5736649 (-) Length   136 a.a.
NCBI ID   WP_002551738.1    Uniprot ID   A0AAT9SFQ2
Organism   Pseudomonas syringae pv. tomato strain delta X     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5731239..5741649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRB21_RS26890 - 5733198..5735240 (-) 2043 WP_005621029.1 methyl-accepting chemotaxis protein -
  GRB21_RS26895 - 5735273..5735812 (-) 540 WP_011105281.1 chemotaxis protein CheW -
  GRB21_RS26900 pilH 5735827..5736192 (-) 366 WP_003377196.1 twitching motility response regulator PilH -
  GRB21_RS26905 pilG 5736239..5736649 (-) 411 WP_002551738.1 twitching motility response regulator PilG Regulator
  GRB21_RS26910 gshB 5736894..5737853 (+) 960 WP_003377199.1 glutathione synthase -
  GRB21_RS26915 - 5738103..5739005 (+) 903 WP_005736950.1 energy transducer TonB -
  GRB21_RS26920 - 5739081..5739653 (+) 573 WP_005769417.1 YqgE/AlgH family protein -
  GRB21_RS26925 ruvX 5739653..5740093 (+) 441 WP_003377205.1 Holliday junction resolvase RuvX -
  GRB21_RS26930 pyrR 5740336..5740848 (+) 513 WP_005736951.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14943.42 Da        Isoelectric Point: 8.5283

>NTDB_id=410169 GRB21_RS26905 WP_002551738.1 5736239..5736649(-) (pilG) [Pseudomonas syringae pv. tomato strain delta X]
MEQHASALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIADNHPRIIFVDIMMPRLDGYQTCALIKNNRAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFVAAEQHIS

Nucleotide


Download         Length: 411 bp        

>NTDB_id=410169 GRB21_RS26905 WP_002551738.1 5736239..5736649(-) (pilG) [Pseudomonas syringae pv. tomato strain delta X]
ATGGAACAACACGCCTCTGCATTGAAAGTCATGGTCATCGATGACTCGAAGACCATCCGCCGCACCGCCGAAACGCTGCT
TAAAAACGCAGGTTGCGAAGTCATCACTGCGATAGACGGTTTTGACGCGCTGGCCAAGATTGCCGATAACCACCCACGAA
TCATATTCGTCGATATCATGATGCCGCGTCTGGACGGCTACCAGACGTGCGCACTGATCAAGAACAACCGTGCATTTAAG
TCCACGCCGGTCATTATGCTGTCCTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGGCGAATCGTCGGTTCCGATCAGTT
TTTGACAAAGCCTTTCAGCAAGGAAGAACTGCTCAGCGCGATCAAGGCTCATGTGCCGGGCTTCGTTGCAGCAGAACAAC
ACATATCGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

91.912

0.691

Multiple sequence alignment