Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GRB21_RS20610 Genome accession   NZ_CP047073
Coordinates   4354323..4355000 (-) Length   225 a.a.
NCBI ID   WP_003381119.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. tomato strain delta X     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4349323..4360000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRB21_RS20585 murB 4350882..4351901 (-) 1020 WP_005770641.1 UDP-N-acetylmuramate dehydrogenase -
  GRB21_RS20590 kdsB 4351936..4352700 (-) 765 WP_005770642.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GRB21_RS20595 - 4352697..4352882 (-) 186 WP_003381112.1 Trm112 family protein -
  GRB21_RS20600 lpxK 4352900..4353895 (-) 996 WP_005770644.1 tetraacyldisaccharide 4'-kinase -
  GRB21_RS20605 - 4353895..4354326 (-) 432 WP_005770645.1 ExbD/TolR family protein -
  GRB21_RS20610 exbB 4354323..4355000 (-) 678 WP_003381119.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GRB21_RS20615 comA 4355083..4357299 (-) 2217 WP_011104749.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GRB21_RS20620 - 4357537..4359564 (+) 2028 WP_005770647.1 type VI secretion system tip protein VgrG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24257.56 Da        Isoelectric Point: 8.5248

>NTDB_id=410163 GRB21_RS20610 WP_003381119.1 4354323..4355000(-) (exbB) [Pseudomonas syringae pv. tomato strain delta X]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGVLASGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=410163 GRB21_RS20610 WP_003381119.1 4354323..4355000(-) (exbB) [Pseudomonas syringae pv. tomato strain delta X]
GTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCCGATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCATCGCGCCGCCGCACCTGCTGGGTCAGGCGTGGCAGTGGATTCAGGAAA
AGAAACTCGATAACGAAAAGCTCAAGCAGTTGCGCGCCGACTCGCCGCTGGGCGAAATCCTTGCCGCTGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGAAGCCGCCGCCCGTGTCATCCATGACCTGGAGCGCTACCT
GAGCGCGCTGGGCTCTATCGCCGCGATGGCCCCGTTGCTCGGTTTGCTCGGGACGGTGCTGGGCATGATCGAGATCTTCG
GTTCGTTCAACAGCACCGGTGCAACGGCCAATGCCGGTGTGCTGGCAAGCGGTATCTCCAAGGCACTGATCTGTACCGCA
TCGGGCCTTATCGTCGCGATCCCGGCGATCTTCTTTCACCGCTTTCTGCAAAGCCGTGTCGATGAACTGGTGGTCGGCAT
GGAGCAGCAGGCGATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGATCGACGCCAAAATCGACCTCA
AGTCGCTGGCCAGGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738

Multiple sequence alignment