Detailed information NTG0410132

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GQX72_RS11565
• Genome accession: NZ_CP047059
• Coordinates: 2536240..2537247 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae isolate CTMA_1441
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2531240..2542247

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQX72_RS11555 (GQX72_11555)	cysM	2532404..2533291 (+)	888	WP_001279365.1	cysteine synthase CysM	-
GQX72_RS11560 (GQX72_11560)	mutS	2533559..2536147 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
GQX72_RS11565 (GQX72_11565)	rpoS	2536240..2537247 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
GQX72_RS11570 (GQX72_11570)	nlpD	2537321..2538256 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
GQX72_RS11575 (GQX72_11575)	-	2538256..2538882 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GQX72_RS11580 (GQX72_11580)	surE	2538875..2539627 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
GQX72_RS11585 (GQX72_11585)	truD	2539629..2540714 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
GQX72_RS11590 (GQX72_11590)	ispF	2540744..2541220 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GQX72_RS11595 (GQX72_11595)	ispD	2541217..2541915 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GQX72_RS11600 (GQX72_11600)	ftsB	2541912..2542196 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=410132 GQX72_RS11565 WP_000116737.1 2536240..2537247(-) (rpoS) [Vibrio cholerae isolate CTMA_1441]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=410132 GQX72_RS11565 WP_000116737.1 2536240..2537247(-) (rpoS) [Vibrio cholerae isolate CTMA_1441]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1