Detailed information NTG0410102

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GQX72_RS01110
• Genome accession: NZ_CP047059
• Coordinates: 231881..232888 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae isolate CTMA_1441
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 226881..237888

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQX72_RS01090 (GQX72_01095)	metJ	226885..227202 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
GQX72_RS01095 (GQX72_01100)	-	227313..228590 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
GQX72_RS01100 (GQX72_01105)	rpmE	228898..229116 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
GQX72_RS01105 (GQX72_01110)	priA	229371..231575 (+)	2205	WP_001247858.1	primosomal protein N'	-
GQX72_RS01110 (GQX72_01115)	cytR	231881..232888 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
GQX72_RS01115 (GQX72_01120)	-	233060..233611 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
GQX72_RS01120 (GQX72_01125)	hslV	233748..234305 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
GQX72_RS01125 (GQX72_01130)	hslU	234371..235702 (+)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
GQX72_RS01130 (GQX72_01135)	-	235806..236723 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GQX72_RS01135 (GQX72_01140)	rraA	236798..237313 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=410102 GQX72_RS01110 WP_000224452.1 231881..232888(+) (cytR) [Vibrio cholerae isolate CTMA_1441]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=410102 GQX72_RS01110 WP_000224452.1 231881..232888(+) (cytR) [Vibrio cholerae isolate CTMA_1441]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904