Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GQS07_RS03805 Genome accession   NZ_CP047050
Coordinates   823945..825315 (+) Length   456 a.a.
NCBI ID   WP_158209678.1    Uniprot ID   -
Organism   Myroides phaeus strain 18QD1AZ29W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 818945..830315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQS07_RS03780 - 819032..820669 (-) 1638 WP_158209674.1 DUF4270 domain-containing protein -
  GQS07_RS03785 - 820718..821521 (-) 804 WP_158209675.1 glycogen/starch synthase -
  GQS07_RS03790 panC 821632..822480 (+) 849 WP_158209676.1 pantoate--beta-alanine ligase -
  GQS07_RS03795 panD 822493..822843 (+) 351 WP_090404303.1 aspartate 1-decarboxylase -
  GQS07_RS03800 - 822848..823810 (+) 963 WP_158209677.1 YbhN family protein -
  GQS07_RS03805 radA 823945..825315 (+) 1371 WP_158209678.1 DNA repair protein RadA Machinery gene
  GQS07_RS03815 - 826071..826712 (-) 642 WP_158209679.1 trimeric intracellular cation channel family protein -
  GQS07_RS03820 - 826742..828028 (-) 1287 WP_158209680.1 aldehyde dehydrogenase family protein -
  GQS07_RS13675 - 828154..828324 (+) 171 WP_199269106.1 hypothetical protein -
  GQS07_RS03825 - 828579..829532 (-) 954 WP_158209681.1 L-threonine 3-dehydrogenase -
  GQS07_RS03830 - 829696..830292 (+) 597 WP_158209682.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50081.53 Da        Isoelectric Point: 6.0300

>NTDB_id=410042 GQS07_RS03805 WP_158209678.1 823945..825315(+) (radA) [Myroides phaeus strain 18QD1AZ29W]
MAKVKTAFFCQSCGAQTPKWMGQCPTCREWNTLVEEVIQKEEKTGWKAATTSGSTTKRVAKPLRVKEIDSTEEIRMNTLD
YELNRVLGGGLVPGSMVLLGGEPGIGKSTLLLQISLRLPFKTLYVSGEESQKQIKMRAERINPVNDNCYILTETNTQNIF
RQIEEIQPDVLIIDSIQTLHTDYIESSAGTVSQIKECTAELTKFAKETGTPVLIIGHITKDGSIAGPKMLEHMVDTVLQF
EGDRNHVYRILRANKNRFGSTAELGIYEMQGSGLREVSNPSEILISHKDEELSGTAIAATLEGMRPLMVEVQALVSTAVY
GTPQRSATGYNLKRLNMILAVLEKRAGFRLGQKDVFLNITGGITVDDPAIDLGVVASILSSDQDISIDKGVTFAGEVGLS
GEIRPVNRVDQRIQEAEKLGFTQILVSKYNKIGYTGSGIKVILVTKIEDVVEHLFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=410042 GQS07_RS03805 WP_158209678.1 823945..825315(+) (radA) [Myroides phaeus strain 18QD1AZ29W]
ATGGCAAAGGTAAAAACAGCTTTTTTCTGTCAAAGTTGCGGGGCTCAAACTCCTAAATGGATGGGACAATGTCCTACGTG
TAGAGAGTGGAATACTCTTGTTGAAGAGGTTATTCAAAAAGAAGAAAAAACAGGATGGAAGGCTGCAACAACGTCTGGTT
CTACAACAAAAAGAGTAGCAAAACCTTTACGTGTTAAAGAAATTGATAGTACGGAAGAAATTCGAATGAATACATTAGAC
TATGAGTTAAATCGCGTTCTTGGAGGTGGTTTGGTTCCTGGATCAATGGTTTTATTGGGTGGTGAACCTGGTATTGGTAA
GAGTACTCTTTTATTGCAAATTTCTCTTCGCTTACCTTTTAAAACACTTTATGTATCTGGAGAGGAAAGTCAAAAACAGA
TTAAAATGCGTGCAGAACGTATTAATCCTGTAAATGACAATTGTTATATTCTGACTGAAACTAATACACAAAATATCTTT
AGACAAATAGAAGAAATTCAACCTGATGTGTTGATCATCGACTCTATTCAAACTTTGCACACAGATTACATTGAATCTTC
TGCAGGTACCGTTTCTCAGATTAAAGAATGTACGGCTGAATTGACAAAGTTTGCTAAAGAAACGGGAACTCCTGTCTTAA
TTATTGGCCACATTACAAAAGATGGAAGTATTGCCGGACCTAAAATGCTTGAGCATATGGTTGATACGGTATTACAATTT
GAAGGGGATAGAAATCACGTGTATCGTATCTTAAGAGCTAATAAAAACCGTTTTGGTTCTACGGCTGAATTAGGTATCTA
CGAAATGCAAGGCAGTGGATTAAGGGAAGTTTCAAATCCTTCTGAAATACTTATCTCTCACAAAGACGAAGAATTGTCAG
GAACAGCAATTGCCGCAACATTAGAGGGTATGCGCCCTTTAATGGTAGAAGTACAAGCATTAGTTAGCACAGCCGTTTAC
GGAACACCTCAACGTAGTGCTACGGGATACAATCTAAAGCGCTTAAATATGATTTTAGCTGTTTTAGAAAAGAGAGCTGG
CTTTAGGTTAGGACAAAAAGACGTTTTCTTAAATATAACTGGAGGAATTACTGTTGATGATCCTGCAATTGACTTAGGGG
TAGTTGCATCTATCCTTTCTTCCGATCAAGATATTTCTATTGACAAAGGAGTAACTTTTGCTGGGGAAGTTGGTTTATCT
GGAGAAATCAGACCTGTTAATCGTGTTGATCAGCGTATTCAAGAGGCAGAAAAACTTGGATTTACTCAAATTTTAGTTTC
TAAATACAACAAAATAGGCTATACAGGCTCAGGAATAAAAGTTATTTTAGTTACTAAAATAGAAGATGTAGTTGAACATT
TATTTGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(336-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(82-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

50.545

100

0.509
  radA Streptococcus pneumoniae Rx1

50.545

100

0.509
  radA Streptococcus pneumoniae R6

50.545

100

0.509
  radA Streptococcus pneumoniae TIGR4

50.545

100

0.509
  radA Streptococcus mitis NCTC 12261

50.327

100

0.507
  radA Streptococcus mitis SK321

50.327

100

0.507
  radA Bacillus subtilis subsp. subtilis str. 168

50.217

100

0.507

Multiple sequence alignment