Detailed information NTG0410015

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: GQR98_RS07150
• Genome accession: NZ_CP047030
• Coordinates: 1727722..1729080 (-)
• Length: 452 a.a.
• NCBI ID: WP_159018916.1
• Uniprot ID: -
• Organism: Algibacter sp. L3A6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1722722..1734080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQR98_RS07150	radA	1727722..1729080 (-)	1359	WP_159018916.1	DNA repair protein RadA	Machinery gene
GQR98_RS07155	-	1729116..1730267 (-)	1152	WP_159018917.1	alpha/beta hydrolase	-
GQR98_RS07160	-	1730362..1731342 (-)	981	WP_159018918.1	lysylphosphatidylglycerol synthase transmembrane domain-containing protein	-
GQR98_RS07165	panD	1731348..1731698 (-)	351	WP_159018919.1	aspartate 1-decarboxylase	-
GQR98_RS07170	panC	1731712..1732563 (-)	852	WP_159018920.1	pantoate--beta-alanine ligase	-
GQR98_RS07175	-	1732726..1733535 (+)	810	WP_159018921.1	glycogen/starch synthase	-

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 49893.25 Da
• Isoelectric Point: 6.9361

>NTDB_id=410015 GQR98_RS07150 WP_159018916.1 1727722..1729080(-) (radA) [Algibacter sp. L3A6]
MAKVKTTFFCQNCGTQYAKWQGQCNACKNWNTIVEEVIQKPEKSDWKTPTNSAKRVSKPLRLKEIDSSKEARLDTSDAEF
NRVLGGGIVPGSLTLLGGEPGIGKSTLLLQISLKLPYRTLYVSGEESQKQIKMRAERINPNNESCYILTETKTQNIFKQI
EALEPDIVIIDSIQTLHSDYIESSSGSISQVKECTTELIKFAKETNTPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVFRILRAQKNRFGSTHELGIYEMLGSGLREVSNPSEILISKKDEELSGNAIAATLEGMRPLMIEVQALVSTAVYGTP
QRSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNEDEALPANYCFAAEVGLSGEI
RPVQRVEQRILEAEKLGFSTIFVSKYNKISLRDTNIKIQLISKIEDLVSSLT

Nucleotide

• Length: 1359 bp

>NTDB_id=410015 GQR98_RS07150 WP_159018916.1 1727722..1729080(-) (radA) [Algibacter sp. L3A6]
ATGGCTAAAGTAAAAACCACTTTTTTTTGCCAAAACTGCGGCACGCAATACGCTAAATGGCAAGGACAATGTAATGCTTG
TAAAAATTGGAACACCATAGTTGAAGAGGTTATACAGAAACCAGAAAAAAGCGATTGGAAAACCCCAACCAATAGCGCTA
AAAGAGTTTCTAAACCTTTACGATTAAAAGAAATCGACTCATCTAAAGAAGCTCGATTAGACACCTCAGATGCTGAATTT
AATCGCGTTTTAGGAGGCGGTATTGTACCAGGATCTCTAACACTTTTAGGAGGAGAACCCGGTATTGGCAAAAGCACATT
GCTTCTTCAAATATCACTAAAACTACCATACAGAACACTATATGTTTCTGGTGAAGAAAGCCAAAAACAAATAAAAATGC
GTGCTGAACGCATTAACCCAAATAACGAAAGCTGTTACATTCTAACAGAAACCAAAACGCAAAATATTTTTAAGCAAATT
GAAGCCTTAGAACCAGACATCGTTATTATAGATTCGATACAAACGCTACATTCCGATTATATAGAATCATCAAGCGGAAG
TATCTCTCAAGTAAAAGAATGCACAACCGAACTTATTAAATTCGCAAAAGAAACAAATACACCAGTAATTTTAATTGGAC
ACATTACTAAAGATGGGAATATTGCAGGACCAAAAATACTAGAGCATATGGTAGATACCGTGCTACAATTTGAAGGCGAC
CGCAACCATGTGTTTAGAATTTTACGTGCACAAAAAAACCGTTTTGGCTCAACCCACGAACTTGGTATTTATGAAATGTT
AGGCTCAGGATTAAGAGAAGTCTCTAACCCTAGTGAAATTTTAATTTCAAAAAAAGACGAAGAACTTTCGGGCAATGCCA
TTGCCGCAACCTTAGAAGGCATGCGCCCTTTAATGATAGAAGTTCAAGCCTTAGTTAGCACAGCTGTATATGGCACACCA
CAACGTAGTGCCACTGGTTTTAATGCTAAACGCCTAAACATGTTATTAGCTGTTTTAGAAAAACGCGCAGGATTTAGACT
AGGCGCAAAAGATGTCTTTTTAAATATTACAGGAGGCATAAATGTTGATGATCCCGCTATAGATTTAGCTGTTGTTGCCG
CTATTTTATCTTCAAATGAAGATGAAGCTTTGCCTGCTAATTATTGTTTTGCTGCAGAGGTTGGATTATCTGGAGAAATT
CGTCCTGTTCAACGTGTAGAACAACGTATTCTAGAAGCTGAAAAACTTGGGTTTTCAACCATTTTTGTATCTAAATACAA
TAAGATTTCATTGAGAGACACTAACATTAAAATTCAATTAATTTCTAAAATTGAAGATTTGGTATCAAGCTTAACCTAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-35)

• AAA domain (AAA_25) (65-219)

• Subunit ChlI of Mg-chelatase (ChlI) (327-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis SK321	49.887	98.009	0.489
radA	Bacillus subtilis subsp. subtilis str. 168	50.93	95.133	0.485
radA	Streptococcus pneumoniae D39	50.82	94.469	0.48
radA	Streptococcus pneumoniae TIGR4	50.82	94.469	0.48
radA	Streptococcus mitis NCTC 12261	50.82	94.469	0.48
radA	Streptococcus pneumoniae R6	50.82	94.469	0.48
radA	Streptococcus pneumoniae Rx1	50.82	94.469	0.48