Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GQR95_RS06340 Genome accession   NZ_CP047028
Coordinates   1453579..1454940 (+) Length   453 a.a.
NCBI ID   WP_159022367.1    Uniprot ID   -
Organism   Formosa sp. L2A11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1448579..1459940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQR95_RS06310 - 1448668..1449228 (-) 561 WP_159022361.1 hypothetical protein -
  GQR95_RS06315 - 1449245..1450054 (-) 810 WP_159022362.1 glycogen/starch synthase -
  GQR95_RS06320 panC 1450164..1451012 (+) 849 WP_159022363.1 pantoate--beta-alanine ligase -
  GQR95_RS06325 panD 1451026..1451376 (+) 351 WP_159022364.1 aspartate 1-decarboxylase -
  GQR95_RS06330 - 1451454..1452341 (+) 888 WP_233266013.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  GQR95_RS06335 - 1452431..1453579 (+) 1149 WP_159022366.1 alpha/beta hydrolase -
  GQR95_RS06340 radA 1453579..1454940 (+) 1362 WP_159022367.1 DNA repair protein RadA Machinery gene
  GQR95_RS06345 - 1455051..1457156 (+) 2106 WP_159022368.1 M13 family metallopeptidase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49820.15 Da        Isoelectric Point: 5.8724

>NTDB_id=409998 GQR95_RS06340 WP_159022367.1 1453579..1454940(+) (radA) [Formosa sp. L2A11]
MAKVKTTFFCQSCGAQYAKWQGQCNSCKAWNTIVEEVIQTPEKSDWKTPTSSNTKRSSIPLLINEIDASQEARLDTFDQE
FNRVLGGGIVPGSLTLLGGEPGIGKSTLLLQVALKLPYKTLYVSGEESQKQIKMRAERINPNNSNCYILTETKTQNIFKQ
IEALEPDIVIVDSIQTLHSDYIESSSGSISQIKECTTELIKFAKETSTPVVLIGHITKDGNIAGPKILEHMVDTVLQFEG
DRNHVFRILRANKNRFGSTNELGIYEMQGSGLREVSNPSEILISKKDEELSGNAISATLEGMRPLMIEVQALVSTAVYGT
PQRSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGITVDDPAIDLAVVAAILSSNEDEALAKDYCFAAEVGLSGE
IRPVQRVEQRIQEAEKLGFSTIFVSKYNKISLKPKAIKIQLISKIEDLVDLIV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=409998 GQR95_RS06340 WP_159022367.1 1453579..1454940(+) (radA) [Formosa sp. L2A11]
ATGGCAAAAGTAAAAACTACATTTTTCTGTCAGAGTTGTGGTGCCCAATATGCTAAATGGCAAGGCCAATGTAACTCTTG
TAAAGCTTGGAATACTATAGTAGAAGAGGTGATTCAGACGCCTGAAAAAAGCGATTGGAAAACACCAACGTCAAGCAATA
CAAAACGGTCTTCTATACCGCTTTTAATAAACGAAATAGATGCGTCTCAAGAAGCGCGATTAGACACATTCGATCAAGAA
TTTAATCGTGTATTAGGTGGCGGAATTGTGCCGGGTTCTTTAACCTTATTAGGAGGAGAGCCAGGAATAGGGAAAAGTAC
TTTGTTGTTACAAGTCGCTTTAAAATTGCCTTACAAAACACTTTATGTCTCTGGAGAAGAAAGCCAGAAACAAATAAAAA
TGCGTGCAGAGCGTATTAATCCTAATAATAGCAACTGCTATATATTAACAGAAACAAAAACACAAAATATTTTCAAGCAA
ATAGAAGCCTTGGAGCCCGATATAGTGATTGTAGATTCTATTCAGACGCTACATAGCGATTATATAGAATCGTCTTCGGG
AAGTATTTCACAAATAAAAGAATGCACTACAGAACTTATAAAGTTCGCAAAAGAAACATCTACTCCGGTTGTTCTTATAG
GCCATATTACTAAAGACGGTAATATCGCTGGACCTAAAATTTTAGAACATATGGTAGATACGGTACTTCAGTTTGAAGGC
GATCGTAATCATGTGTTTAGAATATTAAGAGCCAATAAAAACAGATTTGGATCTACCAATGAACTTGGTATTTACGAAAT
GCAAGGTTCCGGTTTACGTGAAGTTTCTAATCCTTCAGAAATTTTAATTTCTAAAAAAGATGAAGAATTGAGCGGGAATG
CAATTTCTGCAACTTTAGAGGGTATGCGTCCGTTAATGATAGAAGTTCAGGCTTTGGTAAGTACTGCCGTTTATGGTACG
CCACAGCGATCTGCGACAGGTTTTAATGCCAAGCGATTAAACATGTTACTCGCTGTTTTAGAAAAACGCGCGGGATTTAG
ATTGGGAGCTAAAGATGTCTTTTTAAATATTACAGGCGGAATTACTGTAGACGATCCTGCTATAGATTTAGCAGTTGTTG
CAGCTATTTTGTCTTCTAATGAAGATGAAGCTTTGGCAAAAGATTATTGCTTTGCTGCAGAAGTTGGCTTGTCCGGAGAA
ATCCGTCCAGTGCAACGGGTAGAGCAACGTATTCAAGAAGCCGAAAAATTAGGATTTTCAACTATATTTGTATCTAAGTA
TAATAAAATTTCCCTGAAGCCAAAAGCTATTAAAATTCAATTGATTTCTAAAATTGAAGATTTAGTAGATTTAATTGTTT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(68-220)

Subunit ChlI of Mg-chelatase (ChlI)

(328-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.446

99.558

0.492
  radA Streptococcus mitis SK321

49.324

98.013

0.483
  radA Streptococcus pneumoniae D39

48.451

99.779

0.483
  radA Streptococcus pneumoniae TIGR4

48.451

99.779

0.483
  radA Streptococcus mitis NCTC 12261

48.451

99.779

0.483
  radA Streptococcus pneumoniae R6

48.451

99.779

0.483
  radA Streptococcus pneumoniae Rx1

48.451

99.779

0.483

Multiple sequence alignment