Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GQR94_RS06395 Genome accession   NZ_CP047027
Coordinates   1501906..1503267 (+) Length   453 a.a.
NCBI ID   WP_158974699.1    Uniprot ID   -
Organism   Cellulophaga sp. L1A9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1496906..1508267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQR94_RS06365 panC 1497509..1498354 (+) 846 WP_233268646.1 pantoate--beta-alanine ligase -
  GQR94_RS06370 panD 1498372..1498722 (+) 351 WP_013549960.1 aspartate 1-decarboxylase -
  GQR94_RS06375 - 1498727..1499692 (+) 966 WP_158974695.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  GQR94_RS06380 - 1499718..1500860 (+) 1143 WP_158974696.1 alpha/beta hydrolase -
  GQR94_RS06385 - 1500925..1501320 (+) 396 WP_158974697.1 hypothetical protein -
  GQR94_RS06395 radA 1501906..1503267 (+) 1362 WP_158974699.1 DNA repair protein RadA Machinery gene
  GQR94_RS06400 - 1503271..1504311 (-) 1041 WP_158974700.1 aldo/keto reductase -
  GQR94_RS06405 - 1504387..1505148 (-) 762 WP_158974701.1 exodeoxyribonuclease III -
  GQR94_RS06410 - 1505388..1505906 (+) 519 WP_158974702.1 hypothetical protein -
  GQR94_RS06415 - 1506039..1507079 (+) 1041 WP_158974703.1 OmpA family protein -
  GQR94_RS06420 - 1507239..1508162 (+) 924 WP_158974704.1 toxin-antitoxin system YwqK family antitoxin -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49857.34 Da        Isoelectric Point: 6.5092

>NTDB_id=409984 GQR94_RS06395 WP_158974699.1 1501906..1503267(+) (radA) [Cellulophaga sp. L1A9]
MAKTKTTFFCQNCGTQYAKWVGQCTACKEWNTVVEEVVQKEEKSSWKTPTNTAKKVSKPLRVNEISTEKELRLNTFDLEF
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIALKLPYKTLYVSGEESQKQIKMRADRIHPNSDTCFILTETKTQNIFKQI
EDTEPDIVVIDSIQTLHSDYIESAAGSISQIRECTAELIKFAKETNTPVILIGHITKDGSIAGPKILEHMVDSVLQFEGD
RNYVYRILRSLKNRFGSTSELGIYEMQGSGLREVNNPSEILISKNDEGLSGTAIASTVEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNAKRLNMLLAVLEKRAGFKLAAKDVFLNITGGISVDDPAIDLAVIAAILSSNEDIAIEKGVCFAAEVGLAGEI
RPVQRVEQRILEAEKLGFDTIFVSKNNKISLKNTQIKIQLVAKIEDVANYLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=409984 GQR94_RS06395 WP_158974699.1 1501906..1503267(+) (radA) [Cellulophaga sp. L1A9]
ATGGCTAAAACAAAAACAACATTTTTTTGTCAGAATTGCGGCACACAATATGCAAAATGGGTAGGACAATGTACCGCCTG
CAAAGAATGGAATACCGTAGTGGAAGAAGTGGTCCAGAAAGAAGAAAAGTCCAGCTGGAAAACCCCAACAAATACGGCAA
AAAAAGTTTCTAAGCCCTTACGTGTTAATGAAATTAGCACAGAAAAAGAGCTGCGTTTAAATACCTTTGACCTCGAATTT
AATCGCGTTTTAGGTGGCGGCCTCGTTCCTGGATCTTTAACGCTTTTAGGGGGAGAACCTGGAATAGGAAAAAGTACCTT
ACTGCTTCAAATTGCGCTAAAGCTACCCTATAAAACATTGTATGTTTCCGGAGAAGAGAGTCAGAAACAAATTAAAATGC
GTGCCGATCGTATTCACCCAAACAGCGACACCTGCTTTATTTTAACAGAAACAAAAACTCAAAATATTTTTAAGCAAATA
GAAGATACCGAGCCTGATATTGTGGTTATCGATTCTATACAAACCTTGCATTCTGATTATATTGAATCTGCTGCAGGAAG
TATTTCTCAAATTAGAGAGTGTACCGCTGAGCTTATAAAATTTGCTAAAGAAACAAATACTCCTGTTATCTTAATTGGCC
ATATTACTAAAGATGGCTCTATTGCTGGACCAAAAATTTTAGAACACATGGTAGATAGCGTCCTTCAATTTGAGGGCGAT
CGTAATTATGTATATCGGATATTGCGCTCTTTAAAAAACAGATTTGGCTCTACTTCAGAATTAGGAATTTATGAAATGCA
AGGGAGTGGCCTCCGTGAAGTGAACAACCCATCAGAAATATTAATTTCTAAAAATGACGAAGGCTTAAGTGGTACTGCAA
TTGCTTCTACGGTAGAAGGCATGCGCCCTCTTATGATTGAAATTCAAGCTCTAGTAAGTACTGCTGTTTATGGTACACCG
CAACGTTCTACTACTGGATATAATGCAAAACGTTTAAATATGCTCTTAGCAGTTTTAGAAAAACGTGCTGGATTTAAATT
AGCTGCAAAAGATGTCTTCCTAAACATTACAGGTGGAATTTCTGTAGACGATCCTGCGATAGATTTAGCAGTGATTGCCG
CTATTCTTTCTAGTAATGAAGATATCGCTATAGAAAAAGGAGTTTGTTTTGCCGCTGAAGTTGGTTTAGCAGGAGAAATA
CGTCCGGTACAACGCGTAGAGCAACGTATTCTAGAAGCTGAAAAATTAGGTTTCGACACCATTTTCGTTTCTAAAAACAA
CAAAATCAGTCTAAAAAATACGCAAATAAAAATTCAGCTTGTAGCCAAAATTGAAGATGTAGCGAACTATTTGTTTGGAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-219)

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.026

100

0.483
  radA Streptococcus pneumoniae Rx1

48.026

100

0.483
  radA Streptococcus pneumoniae R6

48.026

100

0.483
  radA Streptococcus pneumoniae TIGR4

48.026

100

0.483
  radA Streptococcus mitis SK321

47.692

100

0.479
  radA Streptococcus mitis NCTC 12261

47.692

100

0.479
  radA Bacillus subtilis subsp. subtilis str. 168

50

94.923

0.475

Multiple sequence alignment