Detailed information NTG0409799

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MS8320_RS14545
• Genome accession: NZ_CP059339
• Coordinates: 2929670..2930662 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081572.1
• Uniprot ID: -
• Organism: Escherichia coli strain MS8320
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2924670..2935662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MS8320_RS14525 (MS8320_2828)	ygbM	2925301..2926077 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
MS8320_RS14530 (MS8320_2829)	ygbN	2926166..2927530 (+)	1365	WP_000104433.1	GntP family transporter	-
MS8320_RS14535 (MS8320_2830)	-	2927673..2928716 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
MS8320_RS14540 (MS8320_2831)	-	2928941..2929492 (+)	552	WP_001179442.1	flavodoxin family protein	-
MS8320_RS14545 (MS8320_2832)	rpoS	2929670..2930662 (-)	993	WP_000081572.1	RNA polymerase sigma factor RpoS	Regulator
MS8320_RS14550 (MS8320_2833)	nlpD	2930725..2931819 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
MS8320_RS14555 (MS8320_2834)	pcm	2932004..2932630 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
MS8320_RS14560 (MS8320_2835)	surE	2932624..2933385 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
MS8320_RS14565 (MS8320_2836)	truD	2933366..2934415 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
MS8320_RS14570 (MS8320_2837)	ispF	2934412..2934891 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MS8320_RS14575 (MS8320_2838)	ispD	2934891..2935601 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38020.93 Da
• Isoelectric Point: 4.5916

>NTDB_id=409799 MS8320_RS14545 WP_000081572.1 2929670..2930662(-) (rpoS) [Escherichia coli strain MS8320]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFYPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=409799 MS8320_RS14545 WP_000081572.1 2929670..2930662(-) (rpoS) [Escherichia coli strain MS8320]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTTACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712