Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GQ588_RS05585 Genome accession   NZ_CP046996
Coordinates   1136614..1137540 (+) Length   308 a.a.
NCBI ID   WP_015044194.1    Uniprot ID   -
Organism   Dehalobacter restrictus strain 12DCA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1131614..1142540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ588_RS05575 (GQ588_05570) rnc 1131784..1132530 (+) 747 WP_019225653.1 ribonuclease III -
  GQ588_RS05580 (GQ588_05575) smc 1132535..1136128 (+) 3594 WP_025205369.1 chromosome segregation protein SMC -
  GQ588_RS05585 (GQ588_05580) pilA 1136614..1137540 (+) 927 WP_015044194.1 signal recognition particle-docking protein FtsY Machinery gene
  GQ588_RS05590 (GQ588_05585) mtnP 1137543..1138325 (+) 783 WP_015044193.1 S-methyl-5'-thioadenosine phosphorylase -
  GQ588_RS05595 (GQ588_05590) mtnA 1138369..1139403 (+) 1035 WP_015044192.1 S-methyl-5-thioribose-1-phosphate isomerase -
  GQ588_RS05600 (GQ588_05595) - 1139517..1140815 (+) 1299 WP_015044191.1 amidohydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 33542.45 Da        Isoelectric Point: 4.9717

>NTDB_id=409799 GQ588_RS05585 WP_015044194.1 1136614..1137540(+) (pilA) [Dehalobacter restrictus strain 12DCA]
MAGIFSRLKERLTKTREGFVGKVEQLFTGSGKIDEDLYEELEEILLQSDVGVNTTLKLVGMLRASVKEQKINDRSELRDV
LQEHITALLGEEIPLSFADSKPTVYLIVGVNGVGKTTTIGKLAKNLQGQGKNVLLAAGDTFRAAAIEQLEVWGERSGTEV
IKQSEGADPAAVAFDALHAARSRNADVLLIDTAGRLHNKVNLMKELTKIKKVVEREVPDAPHEVLLVLDATTGQNAIQQV
KLFKEAVDVTGIILTKLDGTAKGGVILGIRNEADIPVKLIGIGEGAEDLRPFEPREFARALFDRSEEE

Nucleotide


Download         Length: 927 bp        

>NTDB_id=409799 GQ588_RS05585 WP_015044194.1 1136614..1137540(+) (pilA) [Dehalobacter restrictus strain 12DCA]
GTGGCAGGAATATTTTCCAGACTTAAAGAGCGCTTGACCAAAACCAGAGAAGGTTTTGTCGGCAAAGTTGAACAGCTCTT
TACCGGCTCAGGCAAAATTGATGAAGATCTTTATGAAGAATTGGAAGAGATTCTACTTCAATCAGATGTAGGTGTCAATA
CAACACTGAAATTGGTTGGAATGCTGCGTGCATCCGTCAAAGAACAAAAAATTAACGACCGCTCCGAGCTGAGGGATGTA
CTGCAAGAACATATTACTGCGCTATTGGGTGAAGAGATTCCCTTGTCTTTTGCAGATTCCAAGCCCACCGTCTATCTGAT
CGTTGGTGTCAACGGTGTAGGAAAAACGACCACGATTGGCAAGCTGGCCAAAAATCTGCAGGGCCAGGGCAAAAATGTTT
TGCTGGCGGCAGGGGATACTTTCCGAGCAGCAGCGATCGAGCAATTGGAAGTATGGGGAGAACGGTCCGGGACAGAGGTC
ATCAAACAGTCGGAGGGGGCTGATCCTGCTGCGGTGGCTTTCGATGCGCTTCATGCGGCAAGATCCCGGAATGCAGATGT
CCTCTTGATCGATACTGCCGGAAGACTGCACAATAAAGTGAATCTGATGAAAGAATTGACCAAGATCAAAAAGGTGGTCG
AGCGCGAAGTTCCGGATGCCCCGCACGAGGTGCTGCTGGTACTCGATGCAACGACCGGACAGAACGCCATCCAGCAGGTG
AAACTGTTCAAGGAAGCAGTCGATGTGACAGGGATCATACTCACCAAGCTGGACGGTACAGCTAAAGGCGGCGTAATCCT
GGGGATCCGCAATGAAGCGGATATCCCGGTAAAATTGATTGGAATCGGTGAAGGGGCAGAAGATTTAAGGCCTTTTGAAC
CGAGGGAATTTGCCCGGGCCTTGTTTGACCGTTCTGAGGAGGAATAG

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(102-302)

SRP54-type protein, helical bundle domain (SRP54_N)

(20-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.835

98.377

0.49

Multiple sequence alignment